Merge pull request #2264 from github/backport-v2.25.3-d39d31e68

Merge releases/v3 into releases/v2

.eslintignore

@@ -0,0 +1,4 @@
+**/webpack.config.js
+lib/**
+src/testdata/**
+tests/**

.eslintrc.json

@@ -0,0 +1,77 @@
+
+{
+    "parser": "@typescript-eslint/parser",
+    "parserOptions": {
+        "project": "./tsconfig.json"
+    },
+    "plugins": ["@typescript-eslint", "filenames", "github", "import", "no-async-foreach"],
+    "extends": [
+        "eslint:recommended",
+        "plugin:@typescript-eslint/recommended",
+        "plugin:@typescript-eslint/recommended-requiring-type-checking",
+        "plugin:github/recommended",
+        "plugin:github/typescript",
+        "plugin:import/typescript"
+    ],
+    "rules": {
+        "filenames/match-regex": ["error", "^[a-z0-9-]+(\\.test)?$"],
+        "i18n-text/no-en": "off",
+        "import/extensions": ["error", {
+            // Allow importing JSON files
+            "json": {}
+        }],
+        "import/no-amd": "error",
+        "import/no-commonjs": "error",
+        "import/no-cycle": "error",
+        "import/no-dynamic-require": "error",
+        // Disable the rule that checks that devDependencies aren't imported since we use a single
+        // linting configuration file for both source and test code.
+        "import/no-extraneous-dependencies": ["error", {"devDependencies": true}],
+        "import/no-namespace": "off",
+        "import/no-unresolved": "error",
+        "import/no-webpack-loader-syntax": "error",
+        "import/order": ["error", {
+            "alphabetize": {"order": "asc"},
+            "newlines-between": "always"
+        }],
+        "max-len": ["error", {
+            "code": 120,
+            "ignoreUrls": true,
+            "ignoreStrings": true,
+            "ignoreTemplateLiterals": true
+        }],
+        "no-async-foreach/no-async-foreach": "error",
+        "no-console": "off",
+        "no-sequences": "error",
+        "no-shadow": "off",
+        "@typescript-eslint/no-shadow": ["error"],
+        "one-var": ["error", "never"]
+    },
+    "overrides": [{
+        // "temporarily downgraded during transition to eslint
+        "files": "**",
+        "rules": {
+            "@typescript-eslint/ban-types": "off",
+            "@typescript-eslint/explicit-module-boundary-types": "off",
+            "@typescript-eslint/no-explicit-any": "off",
+            "@typescript-eslint/no-unsafe-assignment": "off",
+            "@typescript-eslint/no-unsafe-call": "off",
+            "@typescript-eslint/no-unsafe-member-access": "off",
+            "@typescript-eslint/no-unsafe-return": "off",
+            "@typescript-eslint/no-var-requires": "off",
+            "@typescript-eslint/prefer-regexp-exec": "off",
+            "@typescript-eslint/require-await": "off",
+            "@typescript-eslint/restrict-template-expressions": "off",
+            "func-style": "off",
+            "sort-imports": "off"
+        }
+    }],
+    "settings": {
+        "import/resolver": {
+            "node": {
+                "moduleDirectory": ["node_modules", "src"]
+            },
+            "typescript": {}
+        }
+    }
+}

.github/actions/check-codescanning-config/action.yml

@@ -29,16 +29,7 @@ inputs:
   tools:
     required: true
     description: |
-      The version of CodeQL passed to the `tools` input of the init action.
-      This can be any of the following:
-
-      - A local path to a tarball containing the CodeQL tools, or
-      - A URL to a GitHub release assets containing the CodeQL tools, or
-      - A special value `linked` which is forcing the use of the CodeQL tools
-        that the action has been bundled with.
-
-      If not specified, the Action will check in several places until it finds
-      the CodeQL tools.
+      The url of codeql to use.
 
 runs:
   using: composite
@@ -61,12 +52,11 @@ runs:
     - name: Check config
       working-directory: ${{ github.action_path }}
       shell: bash
-      env:
-        EXPECTED_CONFIG_FILE_CONTENTS: '${{ inputs.expected-config-file-contents }}'
-      run: ts-node ./index.ts "$RUNNER_TEMP/user-config.yaml" "$EXPECTED_CONFIG_FILE_CONTENTS"
+      run: ts-node ./index.ts "${{ runner.temp }}/user-config.yaml" '${{ inputs.expected-config-file-contents }}'
+
     - name: Clean up
       shell: bash
       if: always()
       run: |
-        rm -rf $RUNNER_TEMP/codescanning-config-cli-test
-        rm -rf $RUNNER_TEMP/user-config.yaml
+        rm -rf ${{ runner.temp }}/codescanning-config-cli-test
+        rm -rf ${{ runner.temp }}/user-config.yaml

.github/actions/check-codescanning-config/index.ts

@@ -6,19 +6,9 @@ import * as assert from 'assert'
 
 const actualConfig = loadActualConfig()
 
-function sortConfigArrays(config) {
-  for (const key of Object.keys(config)) {
-    const value = config[key];
-    if (key === 'queries' && Array.isArray(value)) {
-      config[key] = value.sort();
-    }
-  }
-  return config;
-}
-
 const rawExpectedConfig = process.argv[3].trim()
 if (!rawExpectedConfig) {
-  core.setFailed('No expected configuration provided')
+  core.info('No expected configuration provided')
 } else {
   core.startGroup('Expected generated user config')
   core.info(yaml.dump(JSON.parse(rawExpectedConfig)))
@@ -28,8 +18,8 @@ if (!rawExpectedConfig) {
 const expectedConfig = rawExpectedConfig ? JSON.parse(rawExpectedConfig) : undefined;
 
 assert.deepStrictEqual(
-  sortConfigArrays(actualConfig),
-  sortConfigArrays(expectedConfig),
+  actualConfig,
+  expectedConfig,
   'Expected configuration does not match actual configuration'
 );
 

.github/actions/check-sarif/action.yml

@@ -16,5 +16,5 @@ inputs:
       Comma separated list of query ids that should NOT be included in this SARIF file.
 
 runs:
-  using: node24
+  using: node16
   main: index.js

.github/actions/prepare-mergeback-branch/action.yml

@@ -1,80 +0,0 @@
-name: "Prepare mergeback branch"
-description: Prepares a mergeback branch and opens a PR for it
-inputs:
-  base:
-    description: "The name of the base branch"
-    required: true
-  head:
-    description: "The name of the head branch"
-    required: true
-  branch:
-    description: "The name of the branch to create."
-    required: true
-  version:
-    description: "The new version"
-    required: true
-  token:
-    description: "The token to use"
-    required: true
-  dry-run:
-    description: "Set to true to skip creating the PR. The branch will still be pushed."
-    default: "false"
-runs:
-  using: composite
-  steps:
-    - name: Create mergeback branch
-      shell: bash
-      env:
-        VERSION: "${{ inputs.version }}"
-        NEW_BRANCH: "${{ inputs.branch }}"
-      run: |
-        set -exu
-
-        # Ensure we are on the new branch
-        git checkout "${NEW_BRANCH}"
-
-        # Update the version number ready for the next release
-        npm version patch --no-git-tag-version
-
-        # Update the changelog, adding a new version heading directly above the most recent existing one
-        awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
-        git add .
-        git commit -m "Update changelog and version after ${VERSION}"
-
-        git push origin "${NEW_BRANCH}"
-
-    - name: Create PR
-      shell: bash
-      if: inputs.dry-run != 'true'
-      env:
-        VERSION: "${{ inputs.version }}"
-        BASE_BRANCH: "${{ inputs.base }}"
-        HEAD_BRANCH: "${{ inputs.head }}"
-        NEW_BRANCH: "${{ inputs.branch }}"
-        GITHUB_TOKEN: "${{ inputs.token }}"
-      run: |
-        set -exu
-        pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
-        pr_body=$(cat << EOF
-          This PR bumps the version number and updates the changelog after the ${VERSION} release.
-
-          Please do the following:
-
-          - [ ] Remove and re-add the "Rebuild" label to the PR to trigger just this workflow.
-          - [ ] Wait for the "Rebuild" workflow to push a commit updating the distribution files.
-          - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
-          - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
-                selected rather than "Squash and merge" or "Rebase and merge".
-        EOF
-        )
-
-        # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
-        # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
-        gh pr create \
-          --head "${NEW_BRANCH}" \
-          --base "${BASE_BRANCH}" \
-          --title "${pr_title}" \
-          --label "Rebuild" \
-          --body "${pr_body}" \
-          --assignee "${GITHUB_ACTOR}" \
-          --draft

.github/actions/prepare-test/action.yml

@@ -2,16 +2,12 @@ name: "Prepare test"
 description: Performs some preparation to run tests
 inputs:
   version:
-    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'toolcache', 'nightly', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
+    description: "The version of the CodeQL CLI to use. Can be 'latest', 'default', 'nightly-latest', 'nightly-YYYY-MM-DD', or 'stable-YYYY-MM-DD'."
     required: true
   use-all-platform-bundle:
     description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
     default: 'false'
     required: false
-  setup-kotlin:
-    description: "If true, we setup kotlin"
-    default: 'true'
-    required: true
 outputs:
   tools-url:
     description: "The value that should be passed as the 'tools' input of the 'init' step."
@@ -29,27 +25,10 @@ runs:
     - id: get-url
       name: Determine URL
       shell: bash
-      env:
-        VERSION: ${{ inputs.version }}
-        USE_ALL_PLATFORM_BUNDLE: ${{ inputs.use-all-platform-bundle }}
       run: |
         set -e # Fail this Action if `gh release list` fails.
 
-        if [[ "$VERSION" == "nightly" || "$VERSION" == "nightly-latest" ]]; then
-          echo "tools-url=nightly" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "linked" ]]; then
-          echo "tools-url=linked" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "toolcache" ]]; then
-          echo "tools-url=toolcache" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "default" ]]; then
-          echo "tools-url=" >> "$GITHUB_OUTPUT"
-          exit 0
-        fi
-
-        if [[ "$USE_ALL_PLATFORM_BUNDLE" == "true" ]]; then
+        if [[ ${{ inputs.use-all-platform-bundle }} == "true" ]]; then
           artifact_name="codeql-bundle.tar.gz"
         elif [[ "$RUNNER_OS" == "Linux" ]]; then
           artifact_name="codeql-bundle-linux64.tar.gz"
@@ -62,18 +41,20 @@ runs:
           exit 1
         fi
 
-        if [[ "$VERSION" == *"nightly"* ]]; then
-          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
-          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
-        elif [[ "$VERSION" == *"stable"* ]]; then
-          version=`echo "$VERSION" | sed -e 's/^.*\-//'`
+        if [[ ${{ inputs.version }} == "nightly-latest" ]]; then
+          tag=`gh release list --repo dsp-testing/codeql-cli-nightlies -L 1 | cut -f 3`
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$tag/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == *"nightly"* ]]; then
+          version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version-manual/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == *"stable"* ]]; then
+          version=`echo ${{ inputs.version }} | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/github/codeql-action/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == "latest" ]]; then
+          echo "tools-url=latest" >> $GITHUB_OUTPUT
+        elif [[ ${{ inputs.version }} == "default" ]]; then
+          echo "tools-url=" >> $GITHUB_OUTPUT
         else
           echo "::error::Unrecognized version specified!"
           exit 1
         fi
-
-    - uses: fwilhe2/setup-kotlin@9c245a6425255f5e98ba1ce6c15d31fce7eca9da
-      if: ${{ inputs.setup-kotlin == 'true' }}
-      with:
-        version: 1.8.21

.github/actions/query-filter-test/action.yml

@@ -23,16 +23,7 @@ inputs:
   tools:
     required: true
     description: |
-      The version of CodeQL passed to the `tools` input of the init action.
-      This can be any of the following:
-
-      - A local path to a tarball containing the CodeQL tools, or
-      - A URL to a GitHub release assets containing the CodeQL tools, or
-      - A special value `linked` which is forcing the use of the CodeQL tools
-        that the action has been bundled with.
-
-      If not specified, the Action will check in several places until it finds
-      the CodeQL tools.
+      The url of codeql to use.
 
 runs:
   using: composite
@@ -48,6 +39,7 @@ runs:
     - uses: ./../action/analyze
       with:
         output: ${{ runner.temp }}/results
+        upload-database: false
         upload: never
       env:
         CODEQL_ACTION_TEST_MODE: "true"

.github/actions/release-branches/action.yml

@@ -18,12 +18,8 @@ runs:
   using: "composite"
   steps:
     - id: branches
-      env:
-        MAJOR_VERSION: ${{ inputs.major_version }}
-        LATEST_TAG: ${{ inputs.latest_tag }}
       run: |
-        npm ci
-        npx tsx ./pr-checks/release-branches.ts \
-            --major-version "$MAJOR_VERSION" \
-            --latest-tag "$LATEST_TAG"
+        python ${{ github.action_path }}/release-branches.py \
+            --major-version ${{ inputs.major_version }} \
+            --latest-tag ${{ inputs.latest_tag }}
       shell: bash

.github/actions/release-branches/release-branches.py

@@ -0,0 +1,55 @@
+import argparse
+import json
+import os
+import configparser
+
+# Name of the remote
+ORIGIN = 'origin'
+
+script_dir = os.path.dirname(os.path.realpath(__file__))
+grandparent_dir = os.path.dirname(os.path.dirname(script_dir))
+
+config = configparser.ConfigParser()
+with open(os.path.join(grandparent_dir, 'releases.ini')) as stream:
+    config.read_string('[default]\n' + stream.read())
+
+OLDEST_SUPPORTED_MAJOR_VERSION = int(config['default']['OLDEST_SUPPORTED_MAJOR_VERSION'])
+
+def main():
+
+  parser = argparse.ArgumentParser()
+  parser.add_argument("--major-version", required=True, type=str, help="The major version of the release")
+  parser.add_argument("--latest-tag", required=True, type=str, help="The most recent tag published to the repository")
+  args = parser.parse_args()
+
+  major_version = args.major_version
+  latest_tag = args.latest_tag
+
+  print("major_version: " + major_version)
+  print("latest_tag: " + latest_tag)
+
+  # If this is a primary release, we backport to all supported branches,
+  # so we check whether the major_version taken from the package.json
+  # is greater than or equal to the latest tag pulled from the repo.
+  # For example...
+  #     'v1' >= 'v2' is False # we're operating from an older release branch and should not backport
+  #     'v2' >= 'v2' is True  # the normal case where we're updating the current version
+  #     'v3' >= 'v2' is True  # in this case we are making the first release of a new major version
+  consider_backports = ( major_version >= latest_tag.split(".")[0] )
+
+  with open(os.environ["GITHUB_OUTPUT"], "a") as f:
+
+    f.write(f"backport_source_branch=releases/{major_version}\n")
+
+    backport_target_branches = []
+
+    if consider_backports:
+      for i in range(int(major_version.strip("v"))-1, 0, -1):
+        branch_name = f"releases/v{i}"
+        if i >= OLDEST_SUPPORTED_MAJOR_VERSION:
+          backport_target_branches.append(branch_name)
+
+    f.write("backport_target_branches="+json.dumps(backport_target_branches)+"\n")
+
+if __name__ == "__main__":
+  main()

.github/actions/release-initialise/action.yml

@@ -15,21 +15,15 @@ runs:
       run: echo "$GITHUB_CONTEXT"
       shell: bash
 
-    - name: Set up Node
-      uses: actions/setup-node@v6
-      with:
-        node-version: 20
-        cache: 'npm'
-
     - name: Set up Python
-      uses: actions/setup-python@v6
+      uses: actions/setup-python@v5
       with:
-        python-version: '3.12'
+        python-version: 3.8
 
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install PyGithub==2.3.0 requests
+        pip install PyGithub==1.55 requests
       shell: bash
 
     - name: Update git config

.github/actions/setup-swift/action.yml

@@ -0,0 +1,39 @@
+name: "Set up Swift on Linux"
+description: Sets up an appropriate Swift version on Linux.
+inputs:
+  codeql-path:
+    description: Path to the CodeQL CLI executable.
+    required: true
+runs:
+  using: "composite"
+  steps:
+    - name: Get Swift version
+      id: get_swift_version
+      if: runner.os == 'Linux'
+      shell: bash
+      env: 
+        CODEQL_PATH: ${{ inputs.codeql-path }}
+      run: |
+        SWIFT_EXTRACTOR_DIR="$("$CODEQL_PATH" resolve languages --format json | jq -r '.swift[0]')"
+        if [ $SWIFT_EXTRACTOR_DIR = "null" ]; then
+          VERSION="null"
+        else
+          VERSION="$("$SWIFT_EXTRACTOR_DIR/tools/linux64/extractor" --version | awk '/version/ { print $3 }')"
+          # Specify 5.x.0, otherwise setup Action will default to latest minor version. 
+          if [ $VERSION = "5.7" ]; then
+            VERSION="5.7.0"
+          elif [ $VERSION = "5.8" ]; then
+            VERSION="5.8.0"
+          elif [ $VERSION = "5.9" ]; then
+            VERSION="5.9.0"
+          # setup-swift does not yet support v5.9.1 Remove this when it does.
+          elif [ $VERSION = "5.9.1" ]; then
+            VERSION="5.9.0"
+          fi 
+        fi
+        echo "version=$VERSION" | tee -a $GITHUB_OUTPUT
+
+    - uses: redsun82/setup-swift@b2b6f77ab14f6a9b136b520dc53ec8eca27d2b99 # Please update the corresponding SHA in the CLI's CodeQL Action Integration Test.
+      if: runner.os == 'Linux' && steps.get_swift_version.outputs.version != 'null'
+      with:
+        swift-version: "${{ steps.get_swift_version.outputs.version }}"

.github/actions/verify-debug-artifact-scan-completed/action.yml

@@ -1,6 +0,0 @@
-name: Verify that the best-effort debug artifact scan completed
-description: Verifies that the best-effort debug artifact scan completed successfully during tests
-runs:
-  using: node24
-  main: index.js
-  post: post.js

.github/actions/verify-debug-artifact-scan-completed/index.js

@@ -1,2 +0,0 @@
-// The main step is a no-op, since we can only verify artifact scan completion in the post step.
-console.log("Will verify artifact scan completion in the post step.");

.github/actions/verify-debug-artifact-scan-completed/post.js

@@ -1,11 +0,0 @@
-// Post step - runs after the workflow completes, when artifact scan has finished
-const process = require("process");
-
-const scanFinished = process.env.CODEQL_ACTION_ARTIFACT_SCAN_FINISHED;
-
-if (scanFinished !== "true") {
-  console.error("Error: Best-effort artifact scan did not complete. Expected CODEQL_ACTION_ARTIFACT_SCAN_FINISHED=true");
-  process.exit(1);
-}
-
-console.log("✓ Best-effort artifact scan completed successfully");

.github/codeql/codeql-config-javascript.yml

@@ -1,17 +0,0 @@
-name: "CodeQL config"
-queries:
-  - name: Run custom queries
-    uses: ./queries
-  # Run all extra query suites, both because we want to
-  # and because it'll act as extra testing. This is why
-  # we include both even though one is a superset of the
-  # other, because we're testing the parsing logic and
-  # that the suites exist in the codeql bundle.
-  - uses: security-and-quality
-  - uses: security-experimental
-  - uses: security-extended
-paths-ignore:
-  - lib
-  - tests
-  - "**/*.test.ts"
-  - "**/testing-util.ts"

.github/codeql/codeql-config.yml

@@ -0,0 +1,15 @@
+name: "CodeQL config"
+queries: 
+  - name: Run custom queries
+    uses: ./queries
+  # Run all extra query suites, both because we want to
+  # and because it'll act as extra testing. This is why
+  # we include both even though one is a superset of the
+  # other, because we're testing the parsing logic and
+  # that the suites exist in the codeql bundle.
+  - uses: security-experimental
+  - uses: security-extended
+  - uses: security-and-quality
+paths-ignore:
+  - tests
+  - lib

.github/copilot-instructions.md

@@ -1,21 +0,0 @@
-# CodeQL Action - Copilot Instructions
-
-## Generated code
-
-The CodeQL Action is written in TypeScript and compiled to JavaScript. Both the TypeScript sources and the **generated** JavaScript code are contained in this repository. The TypeScript sources are contained in the `src` directory and the JavaScript code is contained in the `lib` directory. A GitHub Actions workflow checks that the JavaScript code in `lib` is up-to-date. Therefore, you should not review any changes to the contents of the `lib` folder and it is expected that the JavaScript code in `lib` closely mirrors the TypeScript code it is generated from.
-
-GitHub Actions workflows in the `.github/workflows` directory whose filenames start with two underscores (e.g. `__all-platform-bundle.yml`) are automatically generated using the `pr-checks/sync.sh` script from template files in the `pr-checks/checks` directory. Therefore, you do not need to review files in the `.github/workflows` directory that start with two underscores. However, you should review changes to the `pr-checks` directory as well as workflows in the `.github/workflows` directory that do not start with underscores.
-
-## Release process
-
-- A release-PR is a PR which matches all of the following patterns:
-  - PR title starts with the exact prefix: `Merge main into releases/v`
-    - Equivalent regex: `^Merge main into releases\/v`
-  - AND head (source) branch matches the update-branch pattern:
-    - Regex: `^update-v[0-9]+(?:\.[0-9]+)*(?:-[a-f0-9]+)?` (e.g. `update-v3.29.9-cc722e476`)
-  - AND base (target) branch matches a release branch:
-    - Regex: `^releases\/v` (e.g. `releases/v3`)
-
-- Consider all files in release-PRs to have already been reviewed and do not review them, except for the following two files:
-    - `CHANGELOG.md`
-    - `package.json`

.github/dependabot.yml

@@ -1,46 +1,42 @@
 version: 2
 updates:
   - package-ecosystem: npm
-    directories:
-      - "/"
-      - "/pr-checks"
+    directory: "/"
+    reviewers:
+      - "github/codeql-production-shield"
     schedule:
       interval: weekly
-    cooldown:
-      default-days: 7
-      exclude:
-        - "@actions/*"
     labels:
-      - Rebuild
+      - Update dependencies
     # Ignore incompatible dependency updates
     ignore:
-      # This is broken due to the way configuration files have changed.
-      # This might be fixed when we move to eslint v9.
-      - dependency-name: "eslint-plugin-import"
-        versions: [">=2.30.0"]
+      # There is a type incompatibility issue between v0.0.9 and our other dependencies.
+      - dependency-name: "@octokit/plugin-retry"
+        versions: ["~6.0.0"]
+      # v7 requires ESM
+      - dependency-name: "del"
+        versions: ["^7.0.0"]
     groups:
-      npm-minor:
+      npm:
         patterns:
           - "*"
-        update-types:
-          - "minor"
-          - "patch"
   - package-ecosystem: github-actions
-    directories:
-      - "/.github/workflows"
-      - "/.github/actions"
+    directory: "/"
+    reviewers:
+      - "github/codeql-production-shield"
     schedule:
       interval: weekly
-    cooldown:
-      default-days: 7
-      exclude:
-        - "actions/*"
-    labels:
-      - Rebuild
     groups:
-      actions-minor:
+      actions:
+        patterns:
+          - "*"
+  - package-ecosystem: github-actions
+    directory: "/.github/actions/setup-swift/" # All subdirectories outside of "/.github/workflows" must be explicitly included.
+    reviewers:
+      - "github/codeql-production-shield"
+    schedule:
+      interval: weekly
+    groups:
+      actions-setup-swift:
         patterns:
           - "*"
-        update-types:
-          - "minor"
-          - "patch"

.github/pull_request_template.md

@@ -1,82 +1,5 @@
-<!--
-    For GitHub staff: Remember that this is a public repository. Do not link to internal resources.
-                      If necessary, link to this PR from an internal issue and include further details there.
-
-    Everyone: Include a summary of the context of this change, what it aims to accomplish, and why you
-              chose the approach you did if applicable. Indicate any open questions you want to answer
-              during the review process and anything you want reviewers to pay particular attention to.
-
-    See https://github.com/github/codeql-action/blob/main/CONTRIBUTING.md for additional information.
--->
-
-### Risk assessment
-
-For internal use only. Please select the risk level of this change:
-
-- **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
-- **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
-
-#### Which use cases does this change impact?
-
-<!-- Delete options that don't apply. If in doubt, do not delete an option. -->
-
-Workflow types:
-
-- **Advanced setup** - Impacts users who have custom CodeQL workflows.
-- **Managed** - Impacts users with `dynamic` workflows (Default Setup, Code Quality, ...).
-
-Products:
-
-- **Code Scanning** - The changes impact analyses when `analysis-kinds: code-scanning`.
-- **Code Quality** - The changes impact analyses when `analysis-kinds: code-quality`.
-- **Other first-party** - The changes impact other first-party analyses.
-- **Third-party analyses** - The changes affect the `upload-sarif` action.
-
-Environments:
-
-- **Dotcom** - Impacts CodeQL workflows on `github.com` and/or GitHub Enterprise Cloud with Data Residency.
-- **GHES** - Impacts CodeQL workflows on GitHub Enterprise Server.
-- **Testing/None** - This change does not impact any CodeQL workflows in production.
-
-#### How did/will you validate this change?
-
-<!-- Delete options that don't apply. -->
-
-- **Test repository** - This change will be tested on a test repository before merging.
-- **Unit tests** - I am depending on unit test coverage (i.e. tests in `.test.ts` files).
-- **End-to-end tests** - I am depending on PR checks (i.e. tests in `pr-checks`).
-- **Other** - Please provide details.
-- **None** - I am not validating these changes.
-
-#### If something goes wrong after this change is released, what are the mitigation and rollback strategies?
-
-<!-- Delete strategies that don't apply. -->
-
-- **Feature flags** - All new or changed code paths can be fully disabled with corresponding feature flags.
-- **Rollback** - Change can only be disabled by rolling back the release or releasing a new version with a fix.
-- **Development/testing only** - This change cannot cause any failures in production.
-- **Other** - Please provide details.
-
-#### How will you know if something goes wrong after this change is released?
-
-<!-- Delete options that don't apply. -->
-
-- **Telemetry** - I rely on existing telemetry or have made changes to the telemetry.
-    - **Dashboards** - I will watch relevant dashboards for issues after the release. Consider whether this requires this change to be released at a particular time rather than as part of a regular release.
-    - **Alerts** - New or existing monitors will trip if something goes wrong with this change.
-- **Other** - Please provide details.
-
-#### Are there any special considerations for merging or releasing this change?
-
-<!--
-    Consider whether this change depends on a different change in another repository that should be released first.
--->
-
-- **No special considerations** - This change can be merged at any time.
-- **Special considerations** - This change should only be merged once certain preconditions are met. Please provide details of those or link to this PR from an internal issue.
-
 ### Merge / deployment checklist
 
-- Confirm this change is backwards compatible with existing workflows.
-- Consider adding a [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) entry for this change.
-- Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) and docs have been updated if necessary.
+- [ ] Confirm this change is backwards compatible with existing workflows.
+- [ ] Confirm the [readme](https://github.com/github/codeql-action/blob/main/README.md) has been updated if necessary.
+- [ ] Confirm the [changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) has been updated if necessary.

.github/releases.ini

@@ -0,0 +1 @@
+OLDEST_SUPPORTED_MAJOR_VERSION=2

.github/sizeup.yml

@@ -1,55 +0,0 @@
-labeling:
-  applyCategoryLabels: true
-  categoryLabelPrefix: "size/"
-
-commenting:
-  addCommentWhenScoreThresholdHasBeenExceeded: false
-
-sizeup:
-  categories:
-    - name: extra small
-      lte: 25
-      label:
-        name: XS
-        description: Should be very easy to review
-        color: 3cbf00
-    - name: small
-      lte: 100
-      label:
-        name: S
-        description: Should be easy to review
-        color: 5d9801
-    - name: medium
-      lte: 250
-      label:
-        name: M
-        description: Should be of average difficulty to review
-        color: 7f7203
-    - name: large
-      lte: 500
-      label:
-        name: L
-        description: May be hard to review
-        color: a14c05
-    - name: extra large
-      lte: 1000
-      label:
-        name: XL
-        description: May be very hard to review
-        color: c32607
-    - name: extra extra large
-      label:
-        name: XXL
-        description: May be extremely hard to review
-        color: e50009
-  ignoredFilePatterns:
-    - ".github/workflows/__*"
-    - "lib/**/*"
-    - "package-lock.json"
-  testFilePatterns:
-    - "**/*.test.ts"
-  scoring:
-    # This formula and the aliases below it are written in prefix notation.
-    # For an explanation of how this works, please see:
-    # https://github.com/lerebear/sizeup-core/blob/main/README.md#prefix-notation
-    formula: "- - + additions deletions comments whitespace"

.github/update-release-branch.py

@@ -1,6 +1,5 @@
 import argparse
 import datetime
-import fileinput
 import re
 from github import Github
 import json
@@ -71,9 +70,8 @@ def open_pr(
     body.append('')
     body.append('Contains the following pull requests:')
     for pr in pull_requests:
-      # Use PR author if they are GitHub staff, otherwise use the merger
-      display_user = get_pr_author_if_staff(pr) or get_merger_of_pr(repo, pr)
-      body.append(f'- #{pr.number} (@{display_user})')
+      merger = get_merger_of_pr(repo, pr)
+      body.append(f'- #{pr.number} (@{merger})')
 
   # List all commits not part of a PR
   if len(commits_without_pull_requests) > 0:
@@ -98,8 +96,8 @@ def open_pr(
   body.append(' - [ ] Ensure the docs team is aware of any documentation changes that need to be released.')
 
   if not is_primary_release:
-    body.append(' - [ ] Remove and re-add the "Rebuild" label to the PR to trigger just this workflow.')
-    body.append(' - [ ] Wait for the "Rebuild" workflow to push a commit updating the distribution files.')
+    body.append(' - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.')
+    body.append(' - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.')
 
   body.append(' - [ ] Mark the PR as ready for review to trigger the full set of PR checks.')
   body.append(' - [ ] Approve and merge this PR. Make sure `Create a merge commit` is selected rather than `Squash and merge` or `Rebase and merge`.')
@@ -109,7 +107,7 @@ def open_pr(
     body.append(' - [ ] Merge all backport PRs to older release branches, that will automatically be created once this PR is merged.')
 
   title = f'Merge {source_branch} into {target_branch}'
-  labels = ['Rebuild'] if not is_primary_release else []
+  labels = ['Update dependencies'] if not is_primary_release else []
 
   # Create the pull request
   # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft so that
@@ -169,31 +167,10 @@ def get_pr_for_commit(commit):
 def get_merger_of_pr(repo, pr):
   return repo.get_commit(pr.merge_commit_sha).author.login
 
-# Get the PR author if they are GitHub staff, otherwise None.
-def get_pr_author_if_staff(pr):
-  if pr.user is None:
-    return None
-  if getattr(pr.user, 'site_admin', False):
-    return pr.user.login
-  return None
-
 def get_current_version():
   with open('package.json', 'r') as f:
     return json.load(f)['version']
 
-# `npm version` doesn't always work because of merge conflicts, so we
-# replace the version in package.json textually.
-def replace_version_package_json(prev_version, new_version):
-  prev_line_is_codeql = False
-  for line in fileinput.input('package.json', inplace = True, encoding='utf-8'):
-    if prev_line_is_codeql and f'\"version\": \"{prev_version}\"' in line:
-      print(line.replace(prev_version, new_version), end='')
-    else:
-      prev_line_is_codeql = False
-      print(line, end='')
-    if '\"name\": \"codeql\",' in line:
-        prev_line_is_codeql = True
-
 def get_today_string():
   today = datetime.datetime.today()
   return '{:%d %b %Y}'.format(today)
@@ -380,10 +357,10 @@ def main():
       # releases.
       run_git('revert', vOlder_update_commits[0], '--no-edit')
 
-      # Also revert the "Rebuild" commit created by Actions.
-      rebuild_commit = run_git('log', '--grep', '^Rebuild$', '--format=%H').split()[0]
-      print(f'  Reverting {rebuild_commit}')
-      run_git('revert', rebuild_commit, '--no-edit')
+      # Also revert the "Update checked-in dependencies" commit created by Actions.
+      update_dependencies_commit = run_git('log', '--grep', '^Update checked-in dependencies', '--format=%H').split()[0]
+      print(f'  Reverting {update_dependencies_commit}')
+      run_git('revert', update_dependencies_commit, '--no-edit')
 
     else:
       print('  Nothing to revert.')
@@ -397,9 +374,9 @@ def main():
       run_git('commit', '--no-edit')
 
     # Migrate the package version number from a vLatest version number to a vOlder version number
-    print(f'Setting version number to {version} in package.json')
-    replace_version_package_json(get_current_version(), version) # We rely on the `Rebuild` workflow to update package-lock.json
-    run_git('add', 'package.json')
+    print(f'Setting version number to {version}')
+    subprocess.check_output(['npm', 'version', version, '--no-git-tag-version'])
+    run_git('add', 'package.json', 'package-lock.json')
 
     # Migrate the changelog notes from vLatest version numbers to vOlder version numbers
     print(f'Migrating changelog notes from v{source_branch_major_version} to v{target_branch_major_version}')

.github/workflows/__all-platform-bundle.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - All-platform bundle
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,87 +19,55 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: all-platform-bundle-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   all-platform-bundle:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: All-platform bundle
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'true'
-          setup-kotlin: 'true'
       - id: init
         uses: ./../action/init
         with:
-          # Swift is not supported on Ubuntu so we manually exclude it from the list here
-          languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
+        with:
+          upload-database: false
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analysis-kinds.yml

@@ -1,152 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Analysis kinds
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: analysis-kinds-${{github.ref}}
-jobs:
-  analysis-kinds:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: code-scanning,code-quality
-          - os: ubuntu-latest
-            version: linked
-            analysis-kinds: risk-assessment
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: code-scanning,code-quality
-          - os: ubuntu-latest
-            version: nightly-latest
-            analysis-kinds: risk-assessment
-    name: Analysis kinds
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: javascript
-          analysis-kinds: ${{ matrix.analysis-kinds }}
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-          upload-database: false
-          post-processed-sarif-path: '${{ runner.temp }}/post-processed'
-
-      - name: Upload SARIF files
-        uses: actions/upload-artifact@v7
-        with:
-          name: |
-            analysis-kinds-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}
-          path: '${{ runner.temp }}/results/*.sarif'
-          retention-days: 7
-
-      - name: Upload post-processed SARIF
-        uses: actions/upload-artifact@v7
-        with:
-          name: |
-            post-processed-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}
-          path: '${{ runner.temp }}/post-processed'
-          retention-days: 7
-          if-no-files-found: error
-
-      - name: Check quality query does not appear in security SARIF
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        uses: actions/github-script@v8
-        env:
-          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
-          EXPECT_PRESENT: 'false'
-        with:
-          script: ${{ env.CHECK_SCRIPT }}
-      - name: Check quality query appears in quality SARIF
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        uses: actions/github-script@v8
-        env:
-          SARIF_PATH: '${{ runner.temp }}/results/javascript.quality.sarif'
-          EXPECT_PRESENT: 'true'
-        with:
-          script: ${{ env.CHECK_SCRIPT }}
-    env:
-      CODEQL_ACTION_RISK_ASSESSMENT_ID: 1
-      CHECK_SCRIPT: |
-        const fs = require('fs');
-
-        const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-        const expectPresent = JSON.parse(process.env['EXPECT_PRESENT']);
-        const run = sarif.runs[0];
-        const extensions = run.tool.extensions;
-
-        if (extensions === undefined) {
-          core.setFailed('`extensions` property not found in the SARIF run property bag.');
-        }
-
-        // ID of a query we want to check the presence for
-        const targetId = 'js/regex/always-matches';
-        const found = extensions.find(extension => extension.rules && extension.rules.find(rule => rule.id === targetId));
-
-        if (found && expectPresent) {
-          console.log(`Found rule with id '${targetId}'.`);
-        } else if (!found && !expectPresent) {
-          console.log(`Rule with id '${targetId}' was not found.`);
-        } else {
-          core.setFailed(`${ found ? "Found" : "Didn't find" } rule ${targetId}`);
-        }
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__analyze-ref-input.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,85 +19,60 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: analyze-ref-input-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   analyze-ref-input:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
     name: "Analyze: 'ref' and 'sha' from inputs"
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
           languages: cpp,csharp,java,javascript,python
-          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          upload-database: false
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-action.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - autobuild-action
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,71 +19,54 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: autobuild-action-${{github.ref}}-${{inputs.dotnet-version}}
+  workflow_dispatch: {}
 jobs:
   autobuild-action:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: macos-latest
-            version: linked
+            version: latest
           - os: windows-latest
-            version: linked
+            version: latest
     name: autobuild-action
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: csharp
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/autobuild
         env:
-          # Explicitly disable the CLR tracer.
+      # Explicitly disable the CLR tracer.
           COR_ENABLE_PROFILING: ''
           COR_PROFILER: ''
           COR_PROFILER_PATH_64: ''
@@ -90,7 +74,10 @@ jobs:
           CORECLR_PROFILER: ''
           CORECLR_PROFILER_PATH_64: ''
       - uses: ./../action/analyze
+        with:
+          upload-database: false
       - name: Check database
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d csharp ]]; then

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -1,106 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Autobuild direct tracing (custom working directory)
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-  workflow_call:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: autobuild-direct-tracing-with-working-dir-${{github.ref}}-${{inputs.java-version}}
-jobs:
-  autobuild-direct-tracing-with-working-dir:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
-    name: Autobuild direct tracing (custom working directory)
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Java
-        uses: actions/setup-java@v5
-        with:
-          java-version: ${{ inputs.java-version || '17' }}
-          distribution: temurin
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Test setup
-        run: |
-          # Make sure that Gradle build succeeds in autobuild-dir ...
-          cp -a ../action/tests/java-repo autobuild-dir
-          # ... and fails if attempted in the current directory
-          echo > build.gradle
-      - uses: ./../action/init
-        with:
-          build-mode: autobuild
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check that indirect tracing is disabled
-        run: |
-          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
-            echo "Expected indirect tracing to be disabled, but the" \
-              "CODEQL_RUNNER environment variable is set."
-            exit 1
-          fi
-      - uses: ./../action/autobuild
-        with:
-          working-directory: autobuild-dir
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-direct-tracing.yml

@@ -0,0 +1,92 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  autobuild-direct-tracing:
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: latest
+          - os: windows-latest
+            version: latest
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+      - name: Set up Java test repo configuration
+        shell: bash
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Check that indirect tracing is disabled
+        shell: bash
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__autobuild-working-dir.yml

@@ -1,83 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Autobuild working directory
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: autobuild-working-dir-${{github.ref}}
-jobs:
-  autobuild-working-dir:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Autobuild working directory
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Test setup
-        run: |
-          # Make sure that Gradle build succeeds in autobuild-dir ...
-          cp -a ../action/tests/java-repo autobuild-dir
-          # ... and fails if attempted in the current directory
-          echo > build.gradle
-      - uses: ./../action/init
-        with:
-          languages: java
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/autobuild
-        with:
-          working-directory: autobuild-dir
-      - uses: ./../action/analyze
-      - name: Check database
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases"
-          if [[ ! -d java ]]; then
-            echo "Did not find a Java database"
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-autobuild.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Build mode autobuild
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,75 +19,43 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-  workflow_call:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: build-mode-autobuild-${{github.ref}}-${{inputs.java-version}}
+  workflow_dispatch: {}
 jobs:
   build-mode-autobuild:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: windows-latest
             version: nightly-latest
     name: Build mode autobuild
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Java
-        uses: actions/setup-java@v5
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          java-version: ${{ inputs.java-version || '17' }}
-          distribution: temurin
-      - name: Install yq
-        if: runner.os == 'Windows'
-        env:
-          YQ_PATH: ${{ runner.temp }}/yq
-          YQ_VERSION: v4.50.1
-        run: |-
-          gh release download --repo mikefarah/yq --pattern "yq_windows_amd64.exe" "$YQ_VERSION" -O "$YQ_PATH/yq.exe"
-          echo "$YQ_PATH" >> "$GITHUB_PATH"
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Set up Java test repo configuration
         run: |
           mv * .github ../action/tests/multi-language-repo/
@@ -97,7 +66,7 @@ jobs:
         id: init
         with:
           build-mode: autobuild
-          db-location: '${{ runner.temp }}/customDbLocation'
+          db-location: ${{ runner.temp }}/customDbLocation
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
@@ -110,14 +79,6 @@ jobs:
             exit 1
           fi
 
-      - name: Check that indirect tracing is disabled
-        run: |
-          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
-            echo "Expected indirect tracing to be disabled, but the" \
-              "CODEQL_RUNNER environment variable is set."
-            exit 1
-          fi
-
       - uses: ./../action/analyze
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Build mode manual
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,80 +19,48 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: build-mode-manual-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   build-mode-manual:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode manual
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
           build-mode: manual
-          db-location: '${{ runner.temp }}/customDbLocation'
+          db-location: ${{ runner.temp }}/customDbLocation
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
@@ -104,7 +73,12 @@ jobs:
             exit 1
           fi
 
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+
       - name: Build code
+        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze

.github/workflows/__build-mode-none.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Build mode none
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,53 +19,50 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: build-mode-none-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   build-mode-none:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode none
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
           build-mode: none
-          db-location: '${{ runner.temp }}/customDbLocation'
+          db-location: ${{ runner.temp }}/customDbLocation
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
@@ -77,7 +75,7 @@ jobs:
             exit 1
           fi
 
-      # The latest nightly supports omitting the autobuild Action when the build mode is specified.
+  # The latest nightly supports omitting the autobuild Action when the build mode is specified.
       - uses: ./../action/autobuild
         if: matrix.version != 'nightly-latest'
 

.github/workflows/__build-mode-rollback.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Build mode rollback
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,46 +19,43 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: build-mode-rollback-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   build-mode-rollback:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode rollback
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Set up Java test repo configuration
         run: |
           mv * .github ../action/tests/multi-language-repo/
@@ -68,7 +66,7 @@ jobs:
         id: init
         with:
           build-mode: none
-          db-location: '${{ runner.temp }}/customDbLocation'
+          db-location: ${{ runner.temp }}/customDbLocation
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 

.github/workflows/__bundle-from-nightly.yml

@@ -1,72 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: From nightly'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: bundle-from-nightly-${{github.ref}}
-jobs:
-  bundle-from-nightly:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: 'Bundle: From nightly'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - id: init
-        uses: ./../action/init
-        env:
-          CODEQL_ACTION_FORCE_NIGHTLY: true
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: javascript
-      - name: Fail if the CodeQL version is not a nightly
-        if: ${{ !contains(steps.init.outputs.codeql-version, '+') }}
-        run: exit 1
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-from-toolcache.yml

@@ -1,88 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: From toolcache'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: bundle-from-toolcache-${{github.ref}}
-jobs:
-  bundle-from-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: toolcache
-    name: 'Bundle: From toolcache'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache@3
-      - name: Check toolcache contains CodeQL
-        continue-on-error: true
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length === 0) {
-              throw new Error(`CodeQL could not be found in the toolcache`);
-            }
-      - id: setup-codeql
-        uses: ./../action/setup-codeql
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-toolcache.yml

@@ -1,108 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: Caching checks'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: bundle-toolcache-${{github.ref}}
-jobs:
-  bundle-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: 'Bundle: Caching checks'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            fs.rmdirSync(codeqlPath, { recursive: true });
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache@3
-      - name: Check toolcache does not contain CodeQL
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length !== 0) {
-              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
-            }
-            console.log('No versions of CodeQL found in the toolcache');
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-            if (allCodeqlVersions.length > 1) {
-              throw new Error('Multiple CodeQL versions found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-zstd.yml

@@ -1,125 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: Zstandard checks'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: bundle-zstd-${{github.ref}}
-jobs:
-  bundle-zstd:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: 'Bundle: Zstandard checks'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const fs = require('fs');
-            const path = require('path');
-            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
-            if (codeqlPath !== undefined) {
-              fs.rmdirSync(codeqlPath, { recursive: true });
-            }
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: ${{ runner.temp }}/results
-          upload-database: false
-      - name: Upload SARIF
-        uses: actions/upload-artifact@v7
-        with:
-          name: ${{ matrix.os }}-zstd-bundle.sarif
-          path: ${{ runner.temp }}/results/javascript.sarif
-          retention-days: 7
-      - name: Check diagnostic with expected tools URL appears in SARIF
-        uses: actions/github-script@v8
-        env:
-          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
-        with:
-          script: |
-            const fs = require('fs');
-
-            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
-            const run = sarif.runs[0];
-
-            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
-            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
-              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
-            );
-            if (downloadTelemetryNotifications.length !== 1) {
-              core.setFailed(
-                'Expected exactly one reporting descriptor in the ' +
-                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
-                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
-                  `${JSON.stringify(toolExecutionNotifications)}.`
-              );
-            }
-
-            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
-            console.log(`Found tools URL: ${toolsUrl}`);
-
-            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
-
-            if (!toolsUrl.endsWith(expectedExtension)) {
-              core.setFailed(
-                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
-              );
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -1,82 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Clean up database cluster directory
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: cleanup-db-cluster-dir-${{github.ref}}
-jobs:
-  cleanup-db-cluster-dir:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Clean up database cluster directory
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Add a file to the database cluster directory
-        run: |
-          mkdir -p "${{ runner.temp }}/customDbLocation/javascript"
-          touch "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt"
-
-      - uses: ./../action/init
-        id: init
-        with:
-          build-mode: none
-          db-location: '${{ runner.temp }}/customDbLocation'
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - name: Validate file cleaned up
-        run: |
-          if [[ -f "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt" ]]; then
-            echo "File was not cleaned up"
-            exit 1
-          fi
-          echo "File was cleaned up"
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__config-export.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Config export
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,48 +19,53 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: config-export-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   config-export:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Config export
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: javascript
@@ -67,18 +73,18 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v7
+        uses: actions/upload-artifact@v3
         with:
           name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-          path: '${{ runner.temp }}/results/javascript.sarif'
+          path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check config properties appear in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
-          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:
           script: |
             const fs = require('fs');

.github/workflows/__config-input.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Config input
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,53 +19,43 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: config-input-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   config-input:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
     name: Config input
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Node.js
-        uses: actions/setup-node@v6
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Copy queries into workspace
         run: |
           cp -a ../action/queries .

.github/workflows/__cpp-deptrace-disabled.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,51 +19,49 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: cpp-deptrace-disabled-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   cpp-deptrace-disabled:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
             version: nightly-latest
     name: 'C/C++: disabling autoinstalling dependencies (Linux)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -74,7 +73,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
-      - run: |
+      - shell: bash
+        run: |
           if ls /usr/bin/errno; then
             echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
             exit 1

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,49 +19,45 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: cpp-deptrace-enabled-on-macos-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   cpp-deptrace-enabled-on-macos:
     strategy:
-      fail-fast: false
       matrix:
         include:
-          - os: macos-latest
-            version: linked
           - os: macos-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -72,7 +69,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - run: |
+      - shell: bash
+        run: |
           if ! ls /usr/bin/errno; then
             echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
           else

.github/workflows/__cpp-deptrace-enabled.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,51 +19,49 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: cpp-deptrace-enabled-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   cpp-deptrace-enabled:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies (Linux)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -74,7 +73,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - run: |
+      - shell: bash
+        run: |
           if ! ls /usr/bin/errno; then
             echo "Did not autoinstall errno"
             exit 1

.github/workflows/__diagnostics-export.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Diagnostic export
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,84 +19,100 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: diagnostics-export-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   diagnostics-export:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: stable-20230403
+          - os: macos-12
+            version: stable-20230403
+          - os: windows-latest
+            version: stable-20230403
+          - os: ubuntu-latest
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Diagnostic export
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Add test diagnostics
+        shell: bash
         env:
           CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
         run: |
-          "$CODEQL_PATH" database add-diagnostic \
-            "$RUNNER_TEMP/codeql_databases/javascript" \
-            --file-path /path/to/file \
-            --plaintext-message "Plaintext message" \
-            --source-id "lang/diagnostics/example" \
-            --source-name "Diagnostic name" \
-            --ready-for-status-page
+          for i in {1..2}; do
+            # Use the same location twice to test the workaround for the bug in CodeQL CLI 2.12.6 that
+            # produces an invalid diagnostic with multiple identical location objects.
+            "$CODEQL_PATH" database add-diagnostic \
+              "$RUNNER_TEMP/codeql_databases/javascript" \
+              --file-path /path/to/file \
+              --plaintext-message "Plaintext message $i" \
+              --source-id "lang/diagnostics/example" \
+              --source-name "Diagnostic name" \
+              --ready-for-status-page
+          done
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload SARIF
-        uses: actions/upload-artifact@v7
+        uses: actions/upload-artifact@v3
         with:
           name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-          path: '${{ runner.temp }}/results/javascript.sarif'
+          path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check diagnostics appear in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
-          SARIF_PATH: '${{ runner.temp }}/results/javascript.sarif'
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:
           script: |
             const fs = require('fs');
 
             function checkStatusPageNotification(n) {
-              const expectedMessage = 'Plaintext message';
+              const expectedMessage = 'Plaintext message 1\n\nCodeQL also found 1 other diagnostic like this. See the workflow log for details.';
               if (n.message.text !== expectedMessage) {
                 core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
               }

.github/workflows/__export-file-baseline-information.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Export file baseline information
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,45 +19,12 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: export-file-baseline-information-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   export-file-baseline-information:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
@@ -66,52 +34,58 @@ jobs:
           - os: windows-latest
             version: nightly-latest
     name: Export file baseline information
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
       - name: Upload SARIF
-        uses: actions/upload-artifact@v7
+        uses: actions/upload-artifact@v3
         with:
           name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
-          path: '${{ runner.temp }}/results/javascript.sarif'
+          path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           expected_baseline_languages="c csharp go java kotlin javascript python ruby"
-          if [[ $RUNNER_OS == "macOS" ]]; then
+          if [[ $RUNNER_OS != "Windows" ]]; then
             expected_baseline_languages+=" swift"
           fi
 
@@ -127,6 +101,5 @@ jobs:
             fi
           done
     env:
-      CODEQL_ACTION_SKIP_FILE_COVERAGE_ON_PRS: false
       CODEQL_ACTION_SUBLANGUAGE_FILE_COVERAGE: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__extractor-ram-threads.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Extractor ram and threads options test
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,52 +19,50 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: extractor-ram-threads-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   extractor-ram-threads:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
     name: Extractor ram and threads options test
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: java
           ram: 230
           threads: 1
       - name: Assert Results
+        shell: bash
         run: |
           if [ "${CODEQL_RAM}" != "230" ]; then
             echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"

.github/workflows/__global-proxy.yml

@@ -1,78 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Proxy test
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: global-proxy-${{github.ref}}
-jobs:
-  global-proxy:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Proxy test
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'false'
-      - uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-    env:
-      https_proxy: http://squid-proxy:3128
-      CODEQL_ACTION_TOLERATE_MISSING_GIT_VERSION: true
-      CODEQL_ACTION_TEST_MODE: true
-    container:
-      image: ubuntu:22.04
-    services:
-      squid-proxy:
-        image: ubuntu/squid:latest
-        ports:
-          - 3128:3128

.github/workflows/__go-custom-queries.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: Custom queries'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,85 +19,103 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-custom-queries-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   go-custom-queries:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: stable-20230403
+          - os: macos-12
+            version: stable-20230403
+          - os: windows-latest
+            version: stable-20230403
+          - os: ubuntu-latest
+            version: stable-v2.13.5
+          - os: macos-12
+            version: stable-v2.13.5
+          - os: windows-latest
+            version: stable-v2.13.5
+          - os: ubuntu-latest
+            version: stable-v2.14.6
+          - os: macos-12
+            version: stable-v2.14.6
+          - os: windows-latest
+            version: stable-v2.14.6
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: windows-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: windows-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Go: Custom queries'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
       - uses: ./../action/init
         with:
           languages: go
           config-file: ./.github/codeql/custom-queries.yml
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
+        with:
+          upload-database: false
     env:
       DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when Go is changed after init step'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,79 +19,66 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-indirect-tracing-workaround-diagnostic-${{github.ref}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   go-indirect-tracing-workaround-diagnostic:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: default
+            version: stable-v2.14.6
     name: 'Go: diagnostic when Go is changed after init step'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Go
-        uses: actions/setup-go@v6
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+      # We need a Go version that ships with statically linked binaries on Linux
+          go-version: '>=1.21.0'
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-      # Deliberately change Go after the `init` step
-      - uses: actions/setup-go@v6
+  # Deliberately change Go after the `init` step
+      - uses: actions/setup-go@v5
         with:
           go-version: '1.20'
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
-          SARIF_PATH: '${{ runner.temp }}/results/go.sarif'
+          SARIF_PATH: ${{ runner.temp }}/results/go.sarif
         with:
           script: |
             const fs = require('fs');

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: diagnostic when `file` is not installed'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,61 +19,47 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-indirect-tracing-workaround-no-file-program-${{github.ref}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   go-indirect-tracing-workaround-no-file-program:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: default
+            version: stable-v2.14.6
     name: 'Go: diagnostic when `file` is not installed'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Go
-        uses: actions/setup-go@v6
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+      # We need a Go version that ships with statically linked binaries on Linux
+          go-version: '>=1.21.0'
       - name: Remove `file` program
         run: |
           echo $(which file)
@@ -83,15 +70,16 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
-          SARIF_PATH: '${{ runner.temp }}/results/go.sarif'
+          SARIF_PATH: ${{ runner.temp }}/results/go.sarif
         with:
           script: |
             const fs = require('fs');

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: workaround for indirect tracing'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,69 +19,59 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-indirect-tracing-workaround-${{github.ref}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   go-indirect-tracing-workaround:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: default
+            version: stable-v2.14.6
     name: 'Go: workaround for indirect tracing'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Go
-        uses: actions/setup-go@v6
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+      # We need a Go version that ships with statically linked binaries on Linux
+          go-version: '>=1.21.0'
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - run: |
+        with:
+          upload-database: false
+      - shell: bash
+        run: |
           if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
             echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
               "CODEQL_ACTION_GO_BINARY environment variable is not set."

.github/workflows/__go-tracing-autobuilder.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with autobuilder step'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,88 +19,89 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-tracing-autobuilder-${{github.ref}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   go-tracing-autobuilder:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: stable-v2.17.6
+            version: stable-20230403
+          - os: macos-12
+            version: stable-20230403
           - os: ubuntu-latest
-            version: stable-v2.18.4
+            version: stable-v2.13.5
+          - os: macos-12
+            version: stable-v2.13.5
           - os: ubuntu-latest
-            version: stable-v2.19.4
+            version: stable-v2.14.6
+          - os: macos-12
+            version: stable-v2.14.6
           - os: ubuntu-latest
-            version: stable-v2.20.7
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
           - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: default
-          - os: ubuntu-latest
-            version: linked
           - os: macos-latest
-            version: linked
+            version: default
+          - os: ubuntu-latest
+            version: latest
+          - os: macos-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with autobuilder step'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Go
-        uses: actions/setup-go@v6
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.22.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/autobuild
       - uses: ./../action/analyze
-      - run: |
+        with:
+          upload-database: false
+      - shell: bash
+        run: |
           if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
             echo "Expected the Go autobuilder to be run, but the" \
               "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with custom build steps'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,89 +19,91 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-tracing-custom-build-steps-${{github.ref}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   go-tracing-custom-build-steps:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: stable-v2.17.6
+            version: stable-20230403
+          - os: macos-12
+            version: stable-20230403
           - os: ubuntu-latest
-            version: stable-v2.18.4
+            version: stable-v2.13.5
+          - os: macos-12
+            version: stable-v2.13.5
           - os: ubuntu-latest
-            version: stable-v2.19.4
+            version: stable-v2.14.6
+          - os: macos-12
+            version: stable-v2.14.6
           - os: ubuntu-latest
-            version: stable-v2.20.7
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
           - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: default
-          - os: ubuntu-latest
-            version: linked
           - os: macos-latest
-            version: linked
+            version: default
+          - os: ubuntu-latest
+            version: latest
+          - os: macos-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with custom build steps'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Go
-        uses: actions/setup-go@v6
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.22.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - run: |
+        with:
+          upload-database: false
+      - shell: bash
+        run: |
           # Once we start running Bash 4.2 in all environments, we can replace the
           # `! -z` flag with the more elegant `-v` which confirms that the variable
           # is actually unset and not potentially set to a blank value.

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Go: tracing with legacy workflow'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,87 +19,88 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: go-tracing-legacy-workflow-${{github.ref}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   go-tracing-legacy-workflow:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: stable-v2.17.6
+            version: stable-20230403
+          - os: macos-12
+            version: stable-20230403
           - os: ubuntu-latest
-            version: stable-v2.18.4
+            version: stable-v2.13.5
+          - os: macos-12
+            version: stable-v2.13.5
           - os: ubuntu-latest
-            version: stable-v2.19.4
+            version: stable-v2.14.6
+          - os: macos-12
+            version: stable-v2.14.6
           - os: ubuntu-latest
-            version: stable-v2.20.7
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
           - os: ubuntu-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: default
-          - os: ubuntu-latest
-            version: linked
           - os: macos-latest
-            version: linked
+            version: default
+          - os: ubuntu-latest
+            version: latest
+          - os: macos-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with legacy workflow'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install Go
-        uses: actions/setup-go@v6
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
         with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.22.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
       - uses: ./../action/init
         with:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
-      - run: |
+        with:
+          upload-database: false
+      - shell: bash
+        run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d go ]]; then
             echo "Did not find a Go database"

.github/workflows/__go.yml

@@ -1,80 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: Manual Check - go
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-jobs:
-  go-custom-queries:
-    name: 'Go: Custom queries'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-custom-queries.yml
-    with:
-      dotnet-version: ${{ inputs.dotnet-version }}
-      go-version: ${{ inputs.go-version }}
-  go-indirect-tracing-workaround-diagnostic:
-    name: 'Go: diagnostic when Go is changed after init step'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-indirect-tracing-workaround-no-file-program:
-    name: 'Go: diagnostic when `file` is not installed'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-indirect-tracing-workaround:
-    name: 'Go: workaround for indirect tracing'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-indirect-tracing-workaround.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-autobuilder:
-    name: 'Go: tracing with autobuilder step'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-autobuilder.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-custom-build-steps:
-    name: 'Go: tracing with custom build steps'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-custom-build-steps.yml
-    with:
-      go-version: ${{ inputs.go-version }}
-  go-tracing-legacy-workflow:
-    name: 'Go: tracing with legacy workflow'
-    permissions:
-      contents: read
-      security-events: read
-    uses: ./.github/workflows/__go-tracing-legacy-workflow.yml
-    with:
-      go-version: ${{ inputs.go-version }}

.github/workflows/__init-with-registries.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Download using registries'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,54 +19,64 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: init-with-registries-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   init-with-registries:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
-            version: linked
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Download using registries'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       packages: read
+
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Init with registries
         uses: ./../action/init
         with:
-          db-location: '${{ runner.temp }}/customDbLocation'
+          db-location: ${{ runner.temp }}/customDbLocation
           tools: ${{ steps.prepare-test.outputs.tools-url }}
           config-file: ./.github/codeql/codeql-config-registries.yml
           languages: javascript
@@ -75,6 +86,7 @@ jobs:
               token: "${{ secrets.GITHUB_TOKEN }}"
 
       - name: Verify packages installed
+        shell: bash
         run: |
           PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
           CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
@@ -96,6 +108,7 @@ jobs:
           fi
 
       - name: Verify qlconfig.yml file was created
+        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
@@ -108,6 +121,9 @@ jobs:
           fi
 
       - name: Verify contents of qlconfig.yml
+    # yq is not available on windows
+        if: runner.os != 'Windows'
+        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'

.github/workflows/__javascript-source-root.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Custom source root
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,51 +19,49 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: javascript-source-root-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   javascript-source-root:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
             version: nightly-latest
     name: Custom source root
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Move codeql-action
+        shell: bash
         run: |
           mkdir ../new-source-root
           mv * ../new-source-root
@@ -73,8 +72,11 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
         with:
+          upload-database: false
           skip-queries: true
+          upload: never
       - name: Assert database exists
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d javascript ]]; then

.github/workflows/__job-run-uuid-sarif.yml

@@ -1,86 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Job run UUID added to SARIF
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: job-run-uuid-sarif-${{github.ref}}
-jobs:
-  job-run-uuid-sarif:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Job run UUID added to SARIF
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        with:
-          output: '${{ runner.temp }}/results'
-      - name: Upload SARIF
-        uses: actions/upload-artifact@v7
-        with:
-          name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
-          path: '${{ runner.temp }}/results/javascript.sarif'
-          retention-days: 7
-      - name: Check results
-        run: |
-          cd "$RUNNER_TEMP/results"
-          actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)
-          if [[ "$actual" != "$JOB_RUN_UUID" ]]; then
-            echo "Expected SARIF output to contain job run UUID '$JOB_RUN_UUID', but found '$actual'."
-            exit 1
-          else
-            echo "Found job run UUID '$actual'."
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__language-aliases.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Language aliases
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,54 +19,51 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: language-aliases-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   language-aliases:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
     name: Language aliases
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
-          languages: C#,java-kotlin,typescript
+          languages: C#,java-kotlin,swift,typescript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-      - name: 'Check languages'
+      - name: Check languages
         run: |
-          expected_languages="csharp,java,javascript"
+          expected_languages="csharp,java,swift,javascript"
           actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
 
           if [ "$expected_languages" != "$actual_languages" ]; then

.github/workflows/__local-bundle.yml

@@ -1,103 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Local CodeQL bundle
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: local-bundle-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
-jobs:
-  local-bundle:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-    name: Local CodeQL bundle
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Fetch latest CodeQL bundle
-        run: |
-          wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst
-      - id: init
-        uses: ./../action/init
-        with:
-          # Swift is not supported on Ubuntu so we manually exclude it from the list here
-          languages: cpp,csharp,go,java,javascript,python,ruby
-          tools: ./codeql-bundle-linux64.tar.zst
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__multi-language-autodetect.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Multi-language repository
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,129 +19,89 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: multi-language-autodetect-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   multi-language-autodetect:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: stable-v2.17.6
-          - os: macos-latest
-            version: stable-v2.17.6
+            version: stable-20230403
+          - os: macos-12
+            version: stable-20230403
           - os: ubuntu-latest
-            version: stable-v2.18.4
-          - os: macos-latest
-            version: stable-v2.18.4
+            version: stable-v2.13.5
+          - os: macos-12
+            version: stable-v2.13.5
           - os: ubuntu-latest
-            version: stable-v2.19.4
-          - os: macos-latest
-            version: stable-v2.19.4
+            version: stable-v2.14.6
+          - os: macos-12
+            version: stable-v2.14.6
           - os: ubuntu-latest
-            version: stable-v2.20.7
+            version: stable-v2.15.5
           - os: macos-latest
-            version: stable-v2.20.7
+            version: stable-v2.15.5
           - os: ubuntu-latest
-            version: stable-v2.21.4
+            version: stable-v2.16.6
           - os: macos-latest
-            version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: macos-latest
-            version: stable-v2.22.4
+            version: stable-v2.16.6
           - os: ubuntu-latest
             version: default
           - os: macos-latest
             version: default
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: macos-latest
-            version: linked
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
           - os: macos-latest
             version: nightly-latest
     name: Multi-language repository
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install Python 3.13 for older CLI versions
-        # We need Python 3.13 for older CLI versions because they are not compatible with Python 3.14 or newer.
-        # See https://github.com/github/codeql-action/pull/3212
-        if: matrix.version != 'nightly-latest' && matrix.version != 'linked'
-        uses: actions/setup-python@v6
+      - uses: actions/setup-go@v5
         with:
-          python-version: '3.13'
-
-      - name: Use Xcode 16
-        if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
-        run: sudo xcode-select -s "/Applications/Xcode_16.app"
+          go-version: '>=1.21.0'
 
       - uses: ./../action/init
         id: init
         with:
-          db-location: '${{ runner.temp }}/customDbLocation'
-          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby' || '' }}
+          db-location: ${{ runner.temp }}/customDbLocation
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+
       - name: Build code
+        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze
@@ -149,6 +110,7 @@ jobs:
           upload-database: false
 
       - name: Check language autodetect for all languages excluding Swift
+        shell: bash
         run: |
           CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
           if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -186,8 +148,9 @@ jobs:
             exit 1
           fi
 
-      - name: Check language autodetect for Swift on macOS
-        if: runner.os == 'macOS'
+      - name: Check language autodetect for Swift
+        if: runner.os != 'Windows' && matrix.version != 'stable-20230403'
+        shell: bash
         run: |
           SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
           if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -195,5 +158,4 @@ jobs:
             exit 1
           fi
     env:
-      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -1,81 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Overlay database init fallback
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: overlay-init-fallback-${{github.ref}}
-jobs:
-  overlay-init-fallback:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Overlay database init fallback
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: actions # Any language without overlay support will do
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-        env:
-          CODEQL_OVERLAY_DATABASE_MODE: overlay-base
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          cd "$RUNNER_TEMP/codeql_databases/actions"
-          if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then
-            echo "This test needs to be updated to use a non-overlay language."
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input passed to the CLI'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,107 +19,83 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: packaging-codescanning-config-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config and input passed to the CLI'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
-          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          config-file: .github/codeql/codeql-config-packaging3.yml
           packs: +codeql-testing/codeql-pack1@1.0.0
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
 
       - name: Check results
         uses: ./../action/.github/actions/check-sarif
         with:
           sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-run: 
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-inputs-js.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config and input'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,107 +19,83 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: packaging-config-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   packaging-config-inputs-js:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config and input'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
-          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          config-file: .github/codeql/codeql-config-packaging3.yml
           packs: +codeql-testing/codeql-pack1@1.0.0
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
 
       - name: Check results
         uses: ./../action/.github/actions/check-sarif
         with:
           sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-run: 
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-js.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Config file'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,106 +19,82 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: packaging-config-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   packaging-config-js:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Config file'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
-          config-file: '.github/codeql/codeql-config-packaging.yml'
+          config-file: .github/codeql/codeql-config-packaging.yml
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
 
       - name: Check results
         uses: ./../action/.github/actions/check-sarif
         with:
           sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-run: 
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-inputs-js.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: 'PR Check - Packaging: Action input'
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,106 +19,82 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: packaging-inputs-js-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   packaging-inputs-js:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: 'Packaging: Action input'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Install Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
-          config-file: '.github/codeql/codeql-config-packaging2.yml'
+          config-file: .github/codeql/codeql-config-packaging2.yml
           languages: javascript
           packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
 
       - name: Check results
         uses: ./../action/.github/actions/check-sarif
         with:
           sarif-file: ${{ runner.temp }}/results/javascript.sarif
-          queries-run: javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-run: 
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__remote-config.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Remote config file
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,83 +19,97 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: remote-config-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   remote-config:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: stable-20230403
+          - os: macos-12
+            version: stable-20230403
+          - os: windows-latest
+            version: stable-20230403
+          - os: ubuntu-latest
+            version: stable-v2.13.5
+          - os: macos-12
+            version: stable-v2.13.5
+          - os: windows-latest
+            version: stable-v2.13.5
+          - os: ubuntu-latest
+            version: stable-v2.14.6
+          - os: macos-12
+            version: stable-v2.14.6
+          - os: windows-latest
+            version: stable-v2.14.6
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: windows-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: windows-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Remote config file
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
           languages: cpp,csharp,java,javascript,python
-          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__resolve-environment-action.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Resolve environment
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,53 +19,69 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: resolve-environment-action-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   resolve-environment-action:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: stable-v2.13.4
+          - os: macos-12
+            version: stable-v2.13.4
+          - os: windows-latest
+            version: stable-v2.13.4
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
     name: Resolve environment
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
-          languages: go,javascript-typescript
+          languages: ${{ matrix.version == 'stable-v2.13.4' && 'go' || 'go,javascript-typescript'
+            }}
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
       - name: Resolve environment for Go
@@ -78,13 +95,15 @@ jobs:
         run: exit 1
 
       - name: Resolve environment for JavaScript/TypeScript
+        if: matrix.version != 'stable-v2.13.4'
         uses: ./../action/resolve-environment
         id: resolve-environment-js
         with:
           language: javascript-typescript
 
       - name: Fail if JavaScript/TypeScript configuration present
-        if: fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
+        if: matrix.version != 'stable-v2.13.4' && 
+          fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
         run: exit 1
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__rubocop-multi-language.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - RuboCop multi-language
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,55 +19,55 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: rubocop-multi-language-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   rubocop-multi-language:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
             version: default
     name: RuboCop multi-language
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Set up Ruby
-        uses: ruby/setup-ruby@0cb964fd540e0a24c900370abf38a33466142735 # v1.305.0
+        uses: ruby/setup-ruby@v1
         with:
           ruby-version: 2.6
       - name: Install Code Scanning integration
+        shell: bash
         run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
       - name: Install dependencies
+        shell: bash
         run: bundle install
       - name: RuboCop run
+        shell: bash
         run: |
           bash -c "
             bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif

.github/workflows/__ruby.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Ruby analysis
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,31 +19,18 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: ruby-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   ruby:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: macos-latest
-            version: linked
+            version: latest
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -52,22 +40,32 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Ruby analysis
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           languages: ruby
@@ -77,6 +75,7 @@ jobs:
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
           if [[ ! -d "$RUBY_DB" ]]; then

.github/workflows/__rust.yml

@@ -1,85 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Rust analysis
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: rust-${{github.ref}}
-jobs:
-  rust:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: stable-v2.19.3
-          - os: ubuntu-latest
-            version: stable-v2.22.1
-          - os: ubuntu-latest
-            version: linked
-          - os: ubuntu-latest
-            version: default
-          - os: ubuntu-latest
-            version: nightly-latest
-    name: Rust analysis
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: rust
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
-          if [[ ! -d "$RUST_DB" ]]; then
-            echo "Did not create a database for Rust."
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__scaling-reserved-ram.yml

@@ -0,0 +1,113 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Scaling reserved RAM
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  scaling-reserved-ram:
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-20230403
+          - os: macos-12
+            version: stable-20230403
+          - os: ubuntu-latest
+            version: stable-v2.13.5
+          - os: macos-12
+            version: stable-v2.13.5
+          - os: ubuntu-latest
+            version: stable-v2.14.6
+          - os: macos-12
+            version: stable-v2.14.6
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: Scaling reserved RAM
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+    env:
+      CODEQL_ACTION_SCALING_RESERVED_RAM: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__split-workflow.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Split workflow
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,51 +19,18 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: split-workflow-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   split-workflow:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: macos-latest
-            version: linked
+            version: latest
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -72,46 +40,49 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Split workflow
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
-          config-file: '.github/codeql/codeql-config-packaging3.yml'
+          config-file: .github/codeql/codeql-config-packaging3.yml
           packs: +codeql-testing/codeql-pack1@1.0.0
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
           skip-queries: true
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
 
       - name: Assert No Results
+        shell: bash
         run: |
           if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
             echo "Expected results directory to be empty after skipping query execution!"
@@ -119,9 +90,10 @@ jobs:
           fi
       - uses: ./../action/analyze
         with:
-          output: '${{ runner.temp }}/results'
+          output: ${{ runner.temp }}/results
           upload-database: false
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__start-proxy.yml

@@ -1,103 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Start proxy
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: start-proxy-${{github.ref}}
-jobs:
-  start-proxy:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: linked
-          - os: macos-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-    name: Start proxy
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          languages: csharp
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-
-      - name: Setup proxy for registries
-        id: proxy
-        uses: ./../action/start-proxy
-        with:
-          registry_secrets: |
-            [
-              {
-                "type": "maven_repository",
-                "url": "https://repo.maven.apache.org/maven2/"
-              },
-              {
-                "type": "maven_repository",
-                "url": "https://repo1.maven.org/maven2"
-              }
-            ]
-
-      - name: Print proxy outputs
-        run: |
-          echo "${{ steps.proxy.outputs.proxy_host }}"
-          echo "${{ steps.proxy.outputs.proxy_port }}"
-          echo "${{ steps.proxy.outputs.proxy_urls }}"
-
-      - name: Fail if proxy outputs are not set
-        if: (!steps.proxy.outputs.proxy_host) || (!steps.proxy.outputs.proxy_port) || (!steps.proxy.outputs.proxy_ca_certificate) || (!steps.proxy.outputs.proxy_urls)
-        run: exit 1
-
-      - name: Fail if proxy_urls does not contain all registries
-        if: |
-          join(fromJSON(steps.proxy.outputs.proxy_urls)[*].type, ',') != 'maven_repository,maven_repository'
-          || !contains(steps.proxy.outputs.proxy_urls, 'https://repo.maven.apache.org/maven2/')
-          || !contains(steps.proxy.outputs.proxy_urls, 'https://repo1.maven.org/maven2')
-        run: exit 1
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__submit-sarif-failure.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Submit SARIF after failure
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,70 +19,72 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: submit-sarif-failure-${{github.ref}}
+  workflow_dispatch: {}
 jobs:
   submit-sarif-failure:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
           - os: ubuntu-latest
             version: default
           - os: ubuntu-latest
             version: nightly-latest
     name: Submit SARIF after failure
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - uses: ./init
         with:
           languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Fail
-        # We want this job to pass if the Action correctly uploads the SARIF file for
-        # the failed run.
-        # Setting this step to continue on error means that it is marked as completing
-        # successfully, so will not fail the job.
+    # We want this job to pass if the Action correctly uploads the SARIF file for
+    # the failed run.
+    # Setting this step to continue on error means that it is marked as completing
+    # successfully, so will not fail the job.
         continue-on-error: true
         run: exit 1
       - uses: ./analyze
-        # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
-        # above, we manually disable it with an `if` condition.
+    # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
+    # above, we manually disable it with an `if` condition.
         if: false
         with:
-          category: '/test-codeql-version:${{ matrix.version }}'
+          category: /test-codeql-version:${{ matrix.version }}
     env:
+  # Internal-only environment variable used to indicate that the post-init Action
+  # should expect to upload a SARIF file for the failed run.
       CODEQL_ACTION_EXPECT_UPLOAD_FAILED_SARIF: true
+  # Make sure the uploading SARIF files feature is enabled.
       CODEQL_ACTION_UPLOAD_FAILED_SARIF: true
+  # Upload the failed SARIF file as an integration test of the API endpoint.
       CODEQL_ACTION_TEST_MODE: false
+  # Mark telemetry for this workflow so it can be treated separately.
       CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
+

.github/workflows/__swift-autobuild.yml

@@ -1,83 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Swift analysis using autobuild
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: swift-autobuild-${{github.ref}}
-jobs:
-  swift-autobuild:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: macos-latest
-            version: nightly-latest
-    name: Swift analysis using autobuild
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        id: init
-        with:
-          languages: swift
-          build-mode: autobuild
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check working directory
-        run: pwd
-      - uses: ./../action/autobuild
-        timeout-minutes: 30
-      - uses: ./../action/analyze
-        id: analysis
-        with:
-          upload-database: false
-      - name: Check database
-        run: |
-          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
-          if [[ ! -d "$SWIFT_DB" ]]; then
-            echo "Did not create a database for Swift."
-            exit 1
-          fi
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__swift-custom-build.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Swift analysis using a custom build command
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,96 +19,73 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: swift-custom-build-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   swift-custom-build:
     strategy:
-      fail-fast: false
       matrix:
         include:
+          - os: ubuntu-latest
+            version: latest
           - os: macos-latest
-            version: linked
+            version: latest
+          - os: ubuntu-latest
+            version: default
           - os: macos-latest
             version: default
+          - os: ubuntu-latest
+            version: nightly-latest
           - os: macos-latest
             version: nightly-latest
     name: Swift analysis using a custom build command
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Use Xcode 16
-        if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
-        run: sudo xcode-select -s "/Applications/Xcode_16.app"
       - uses: ./../action/init
         id: init
         with:
           languages: swift
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
       - name: Check working directory
+        shell: bash
         run: pwd
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__test-autobuild-working-dir.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild working directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-autobuild-working-dir:
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: latest
+    name: Autobuild working directory
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+      - name: Test setup
+        shell: bash
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d java ]]; then
+            echo "Did not find a Java database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-local-codeql.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Local CodeQL bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-local-codeql:
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Local CodeQL bundle
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+      - name: Fetch a CodeQL bundle
+        shell: bash
+        env:
+          CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
+        run: |
+          wget "$CODEQL_URL"
+      - id: init
+        uses: ./../action/init
+        with:
+          tools: ./codeql-bundle-linux64.tar.gz
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          upload-database: false
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__test-proxy.yml

@@ -0,0 +1,76 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Proxy test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-proxy:
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: latest
+    name: Proxy test
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          upload-database: false
+    env:
+      https_proxy: http://squid-proxy:3128
+      CODEQL_ACTION_TEST_MODE: true
+    container:
+      image: ubuntu:22.04
+      options: --dns 127.0.0.1
+    services:
+      squid-proxy:
+        image: ubuntu/squid:latest
+        ports:
+          - 3128:3128

.github/workflows/__unset-environment.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Test unsetting environment variables
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,91 +19,77 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: unset-environment-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   unset-environment:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: stable-20230403
+          - os: ubuntu-latest
+            version: stable-v2.13.5
+          - os: ubuntu-latest
+            version: stable-v2.14.6
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: latest
           - os: ubuntu-latest
             version: nightly-latest
     name: Test unsetting environment variables
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         id: init
         with:
           db-location: ${{ runner.temp }}/customDbLocation
-          # Swift is not supported on Ubuntu so we manually exclude it from the list here
-          languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - name: Build code
-        run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
+        shell: bash
+    # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
+    # workaround for our PR checks.
+        run: env -i CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN=true PATH="$PATH" HOME="$HOME"
+          ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
-      - run: |
+      - shell: bash
+        run: |
           CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
           if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
             echo "::error::Did not create a database for CPP, or created it in the wrong location." \

.github/workflows/__upload-ref-sha-input.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,91 +19,65 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: upload-ref-sha-input-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   upload-ref-sha-input:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
           languages: cpp,csharp,java,javascript,python
-          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{ github.sha }}
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
-      # Generate some SARIF we can upload with the upload-sarif step
       - uses: ./../action/analyze
         with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          upload-database: false
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
           upload: never
       - uses: ./../action/upload-sarif
         with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-sarif.yml

@@ -1,173 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Test different uses of `upload-sarif`
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: upload-sarif-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
-jobs:
-  upload-sarif:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-scanning,code-quality
-    name: Test different uses of `upload-sarif`
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: csharp,java,javascript,python
-          analysis-kinds: ${{ matrix.analysis-kinds }}
-      - name: Build code
-        run: ./build.sh
-      # Generate some SARIF we can upload with the upload-sarif step
-      - uses: ./../action/analyze
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          upload: never
-          output: ${{ runner.temp }}/results
-
-      - name: |
-          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
-        uses: ./../action/upload-sarif
-        id: upload-sarif
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          sarif_file: ${{ runner.temp }}/results
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
-      - name: 'Fail for missing output from `upload-sarif` step for `code-scanning`'
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
-        run: exit 1
-      - name: 'Fail for missing output from `upload-sarif` step for `code-quality`'
-        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
-        run: exit 1
-
-      - name: Upload single SARIF file for Code Scanning
-        uses: ./../action/upload-sarif
-        id: upload-single-sarif-code-scanning
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          sarif_file: ${{ runner.temp }}/results/javascript.sarif
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
-      - name: 'Fail for missing output from `upload-single-sarif-code-scanning` step'
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
-        run: exit 1
-      - name: Upload single SARIF file for Code Quality
-        uses: ./../action/upload-sarif
-        id: upload-single-sarif-code-quality
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
-      - name: 'Fail for missing output from `upload-single-sarif-code-quality` step'
-        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
-        run: exit 1
-
-      - name: Change SARIF file extension
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
-      - name: Upload single non-`.sarif` file
-        uses: ./../action/upload-sarif
-        id: upload-single-non-sarif
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        with:
-          ref: 'refs/heads/main'
-          sha: '5e235361806c361d4d3f8859e3c897658025a9a2'
-          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
-      - name: 'Fail for missing output from `upload-single-non-sarif` step'
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
-        run: exit 1
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -1,12 +1,13 @@
 # Warning: This file is generated automatically, and should not be modified.
 # Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
 # to regenerate this file.
 
 name: PR Check - Use a custom `checkout_path`
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   GO111MODULE: auto
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: 'true'
 on:
   push:
     branches:
@@ -18,85 +19,57 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-  merge_group:
-    types:
-      - checks_requested
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      dotnet-version:
-        type: string
-        description: The version of .NET to install
-        required: false
-        default: 9.x
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' || false }}
-  group: with-checkout-path-${{github.ref}}-${{inputs.dotnet-version}}-${{inputs.go-version}}
+  workflow_dispatch: {}
 jobs:
   with-checkout-path:
     strategy:
-      fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: latest
+          - os: macos-latest
+            version: latest
+          - os: windows-latest
+            version: latest
     name: Use a custom `checkout_path`
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
-      security-events: read
+      security-events: write
     timeout-minutes: 45
     runs-on: ${{ matrix.os }}
     steps:
-      # This ensures we don't accidentally use the original checkout for any part of the test.
+      - name: Setup Python on MacOS
+        uses: actions/setup-python@v5
+        if: >-
+          runner.os == 'macOS' && (
+
+          matrix.version == 'stable-20230403' ||
+
+          matrix.version == 'stable-v2.13.5' ||
+
+          matrix.version == 'stable-v2.14.6')
+        with:
+          python-version: '3.11'
       - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: ${{ inputs.dotnet-version || '9.x' }}
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
+        uses: actions/checkout@v4
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
       - name: Delete original checkout
+        shell: bash
         run: |
           # delete the original checkout so we don't accidentally use it.
           # Actions does not support deleting the current working directory, so we
           # delete the contents of the directory instead.
           rm -rf ./* .github .git
-      # Check out the actions repo again, but at a different location.
-      # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
-      - uses: actions/checkout@v6
+  # Check out the actions repo again, but at a different location.
+  # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
+      - uses: actions/checkout@v4
         with:
           ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
           path: x/y/z/some-path
@@ -104,11 +77,12 @@ jobs:
       - uses: ./../action/init
         with:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
-          # it's enough to test one compiled language and one interpreted language
+      # it's enough to test one compiled language and one interpreted language
           languages: csharp,javascript
           source-root: x/y/z/some-path/tests/multi-language-repo
 
       - name: Build code
+        shell: bash
         working-directory: x/y/z/some-path/tests/multi-language-repo
         run: |
           ./build.sh
@@ -118,33 +92,41 @@ jobs:
           checkout_path: x/y/z/some-path/tests/multi-language-repo
           ref: v1.1.0
           sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+          upload: never
+          upload-database: false
+
+      - uses: ./../action/upload-sarif
+        with:
+          ref: v1.1.0
+          sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+          checkout_path: x/y/z/some-path/tests/multi-language-repo
 
       - name: Verify SARIF after upload
+        shell: bash
         run: |
-          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
           EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
           EXPECTED_REF="v1.1.0"
           EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
 
-          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
-          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
-          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
+          ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
 
           if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
             echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
 
           if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
             echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
 
           if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
             echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
     env:

.github/workflows/check-expected-release-files.yml

@@ -9,20 +9,13 @@ on:
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   check-expected-release-files:
-    runs-on: ubuntu-slim
-
-    permissions:
-      contents: read
+    runs-on: ubuntu-latest
 
     steps:
       - name: Checkout CodeQL Action
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
       - name: Check Expected Release Files
         run: |
           bundle_version="$(cat "./src/defaults.json" | jq -r ".bundleVersion")"

.github/workflows/codeql.yml

@@ -4,140 +4,95 @@ on:
   push:
     branches: [main, releases/v*]
   pull_request:
+    branches: [main, releases/v*]
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
-  merge_group:
-    types: [checks_requested]
   schedule:
     # Weekly on Sunday.
     - cron: '30 1 * * 0'
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 env:
   CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
 
 jobs:
   # Identify the CodeQL tool versions to use in the analysis job.
   check-codeql-versions:
-    if: github.triggering_actor != 'dependabot[bot]'
     runs-on: ubuntu-latest
     outputs:
       versions: ${{ steps.compare.outputs.versions }}
 
     permissions:
-      contents: read
-      # We currently need `security-events: read` to access feature flags.
-      security-events: read
+      security-events: write
 
     steps:
-    - uses: actions/checkout@v6
-    - name: Set up default CodeQL bundle
-      id: setup-default
-      uses: ./setup-codeql
-    - name: Set up linked CodeQL bundle
-      id: setup-linked
-      uses: ./setup-codeql
+    - uses: actions/checkout@v4
+    - name: Init with default CodeQL bundle from the VM image
+      id: init-default
+      uses: ./init
       with:
-        tools: linked
-    - name: Compare default and linked CodeQL bundle versions
+        languages: javascript
+    - name: Remove empty database
+      # allows us to run init a second time
+      run: |
+        rm -rf "$RUNNER_TEMP/codeql_databases"
+    - name: Init with latest CodeQL bundle
+      id: init-latest
+      uses: ./init
+      with:
+        tools: latest
+        languages: javascript
+    - name: Compare default and latest CodeQL bundle versions
       id: compare
       env:
-        CODEQL_DEFAULT: ${{ steps.setup-default.outputs.codeql-path }}
-        CODEQL_LINKED: ${{ steps.setup-linked.outputs.codeql-path }}
+        CODEQL_DEFAULT: ${{ steps.init-default.outputs.codeql-path }}
+        CODEQL_LATEST: ${{ steps.init-latest.outputs.codeql-path }}
       run: |
         CODEQL_VERSION_DEFAULT="$("$CODEQL_DEFAULT" version --format terse)"
-        CODEQL_VERSION_LINKED="$("$CODEQL_LINKED" version --format terse)"
+        CODEQL_VERSION_LATEST="$("$CODEQL_LATEST" version --format terse)"
         echo "Default CodeQL bundle version is $CODEQL_VERSION_DEFAULT"
-        echo "Linked CodeQL bundle version is $CODEQL_VERSION_LINKED"
+        echo "Latest CodeQL bundle version is $CODEQL_VERSION_LATEST"
 
-        # If we're running on a pull request, run with both bundles, even if `tools: linked` would
+        # If we're running on a pull request, run with both bundles, even if `tools: latest` would
         # be the same as `tools: null`. This allows us to make the job for each of the bundles a
         # required status check.
         #
-        # If we're running on push or schedule, then we can skip running with `tools: linked` when it would be
+        # If we're running on push or schedule, then we can skip running with `tools: latest` when it would be
         # the same as running with `tools: null`.
-        if [[ "$GITHUB_EVENT_NAME" != "pull_request" && "$GITHUB_EVENT_NAME" != "merge_group" && "$CODEQL_VERSION_DEFAULT" == "$CODEQL_VERSION_LINKED" ]]; then
+        if [[ "$GITHUB_EVENT_NAME" != "pull_request" && "$CODEQL_VERSION_DEFAULT" == "$CODEQL_VERSION_LATEST" ]]; then
           VERSIONS_JSON='[null]'
         else
-          VERSIONS_JSON='[null, "linked"]'
+          VERSIONS_JSON='[null, "latest"]'
         fi
 
         # Output a JSON-encoded list with the distinct versions to test against.
         echo "Suggested matrix config for analysis job: $VERSIONS_JSON"
         echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
 
-  analyze-javascript:
-    if: github.triggering_actor != 'dependabot[bot]'
+  build:
     needs: [check-codeql-versions]
     strategy:
-      fail-fast: false
       matrix:
-        os: [ubuntu-22.04,ubuntu-24.04,windows-2022,windows-2025,macos-14,macos-15]
+        os: [ubuntu-20.04,ubuntu-22.04,windows-2019,windows-2022,macos-11,macos-12,macos-13]
         tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
     runs-on: ${{ matrix.os }}
 
     permissions:
-      contents: read
       security-events: write
 
     steps:
     - name: Checkout
-      uses: actions/checkout@v6
+      uses: actions/checkout@v4
     - name: Initialize CodeQL
       uses: ./init
       id: init
       with:
         languages: javascript
-        config-file: ./.github/codeql/codeql-config-javascript.yml
+        config-file: ./.github/codeql/codeql-config.yml
         tools: ${{ matrix.tools }}
     # confirm steps.init.outputs.codeql-path points to the codeql binary
     - name: Print CodeQL Version
-      run: >
-        "$CODEQL" version --format=json
-      env:
-        CODEQL: ${{steps.init.outputs.codeql-path}}
+      run: ${{steps.init.outputs.codeql-path}} version --format=json
     - name: Perform CodeQL Analysis
       uses: ./analyze
-      with:
-        category: "/language:javascript"
-        upload: ${{ (matrix.os == 'ubuntu-24.04' && !matrix.tools && github.event_name != 'merge_group' && 'always' ) || 'never' }}
-
-  analyze-other:
-    if: github.triggering_actor != 'dependabot[bot]'
-    runs-on: ubuntu-latest
-
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - language: actions
-          - language: python
-
-    permissions:
-      contents: read
-      security-events: write
-
-    steps:
-    - name: Checkout
-      uses: actions/checkout@v6
-    - name: Initialize CodeQL
-      uses: ./init
-      with:
-        languages: ${{ matrix.language }}
-        build-mode: none
-        config: >
-          paths-ignore:
-            - lib
-            - tests
-          queries:
-            - uses: security-and-quality
-    - name: Perform CodeQL Analysis
-      uses: ./analyze
-      with:
-        category: "/language:${{ matrix.language }}"
-        upload: ${{ (github.event_name != 'merge_group' && 'always') || 'never' }}

.github/workflows/codescanning-config-cli.yml

@@ -3,16 +3,6 @@
 name: Code-Scanning config CLI tests
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  # Diff informed queries add an additional query filter which is not yet
-  # taken into account by these tests.
-  CODEQL_ACTION_DIFF_INFORMED_QUERIES: false
-  # Specify overlay enablement manually to ensure stability around the exclude-from-incremental
-  # query filter. Here we only enable for the default code scanning suite.
-  CODEQL_ACTION_OVERLAY_ANALYSIS: true
-  CODEQL_ACTION_OVERLAY_ANALYSIS_JAVASCRIPT: false
-  CODEQL_ACTION_OVERLAY_ANALYSIS_CODE_SCANNING_JAVASCRIPT: true
-  CODEQL_ACTION_OVERLAY_ANALYSIS_STATUS_CHECK: false
-  CODEQL_ACTION_OVERLAY_ANALYSIS_SKIP_RESOURCE_CHECKS: true
 
 on:
   push:
@@ -25,36 +15,29 @@ on:
     - synchronize
     - reopened
     - ready_for_review
-  merge_group:
-    types: [checks_requested]
   schedule:
     - cron: '0 5 * * *'
-  workflow_dispatch:
-
-defaults:
-  run:
-    shell: bash
+  workflow_dispatch: {}
 
 jobs:
   code-scanning-config-tests:
-    if: github.triggering_actor != 'dependabot[bot]'
     continue-on-error: true
 
-    permissions:
-      contents: read
-      packages: read
-      security-events: read
-
     strategy:
-      fail-fast: false
       matrix:
         include:
         - os: ubuntu-latest
-          version: linked
+          version: latest
+        - os: macos-latest
+          version: latest
         - os: ubuntu-latest
           version: default
+        - os: macos-latest
+          version: default
         - os: ubuntu-latest
           version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
 
     # Code-Scanning config not created because environment variable is not set
     name: Code Scanning Configuration tests
@@ -62,50 +45,20 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
     - name: Check out repository
-      uses: actions/checkout@v6
-
-    - name: Set up Node.js
-      uses: actions/setup-node@v6
-      with:
-        node-version: 24
-        cache: 'npm'
-
-    - name: Install dependencies
-      run: npm ci
-
+      uses: actions/checkout@v4
     - name: Prepare test
       id: prepare-test
       uses: ./.github/actions/prepare-test
       with:
         version: ${{ matrix.version }}
 
-    # On PRs, overlay analysis may change the config that is passed to the CLI.
-    # Therefore, we have two variants of the following test, one for PRs and one for other events.
-    - name: Empty file (non-PR)
-      if: github.event_name != 'pull_request'
+    - name: Empty file
       uses: ./../action/.github/actions/check-codescanning-config
       with:
         expected-config-file-contents: "{}"
         languages: javascript
         tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-    - name: Empty file (PR)
-      if: github.event_name == 'pull_request'
-      uses: ./../action/.github/actions/check-codescanning-config
-      with:
-        expected-config-file-contents: |
-          {
-            "query-filters": [
-              {
-                "exclude": {
-                  "tags": "exclude-from-incremental"
-                }
-              }
-            ]
-          }
-        languages: javascript
-        tools: ${{ steps.prepare-test.outputs.tools-url }}
-
     - name: Packs from input
       if: success() || failure()
       uses: ./../action/.github/actions/check-codescanning-config
@@ -204,13 +157,13 @@ jobs:
       with:
         expected-config-file-contents: |
           {
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" },
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }
+            ],
             "packs": {
               "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2", "codeql/javascript-queries" ]
-            },
-            "queries": [
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" },
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }
-            ]
+            }
           }
         languages: javascript
         queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql

.github/workflows/debug-artifacts-failure-safe.yml

@@ -1,118 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist
-# when the analyze step fails.
-name: PR Check - Debug artifacts after failure
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  merge_group:
-    types: [checks_requested]
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  upload-artifacts:
-    if: github.triggering_actor != 'dependabot[bot]'
-    strategy:
-      fail-fast: false
-      matrix:
-        version:
-        - stable-v2.20.3
-        - default
-        - linked
-        - nightly-latest
-    name: Upload debug artifacts after failure in analyze
-    continue-on-error: true
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-    permissions:
-      contents: read
-      # We currently need `security-events: read` to access feature flags.
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ubuntu-latest
-    steps:
-      - name: Dump GitHub event
-        run: cat "${GITHUB_EVENT_PATH}"
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-      - uses: actions/setup-go@v6
-        with:
-          go-version: ^1.13.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: '9.x'
-      - name: Assert best-effort artifact scan completed
-        uses: ./../action/.github/actions/verify-debug-artifact-scan-completed
-      - uses: ./../action/init
-        with:
-          languages: cpp,csharp,go,java,javascript,python
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-        env:
-          # Forces a failure in this step.
-          CODEQL_ACTION_EXTRA_OPTIONS: '{ "database": { "finalize": ["--invalid-option"] } }'
-        with:
-          expect-error: true
-  download-and-check-artifacts:
-    name: Download and check debug artifacts after failure in analyze
-    if: github.triggering_actor != 'dependabot[bot]'
-    needs: upload-artifacts
-    timeout-minutes: 45
-    permissions:
-      contents: read
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@v8
-      - name: Check expected artifacts exist
-        run: |
-          LANGUAGES="cpp csharp go java javascript python"
-          for version in $VERSIONS; do
-            echo "Artifacts from version $version:"
-            pushd "./my-debug-artifacts-${version//./}"
-            for language in $LANGUAGES; do
-              echo "- Checking $language"
-              if [[ ! -f "my-db-$language-partial.zip" ]] ; then
-                echo "Missing a partial database bundle for $language"
-                exit 1
-              fi
-              if [[ ! -d "log" ]] ; then
-                echo "Missing database initialization logs"
-                exit 1
-              fi
-              if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
-                echo "Missing logs for $language"
-                exit 1
-              fi
-            done
-            popd
-          done
-        env:
-          GO111MODULE: auto

.github/workflows/debug-artifacts-failure.yml

@@ -0,0 +1,90 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist
+# when the analyze step fails.
+name: PR Check - Debug artifacts after failure
+env:
+  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
+  # workaround for our PR checks.
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: true
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    name: Upload debug artifacts after failure in analyze
+    continue-on-error: true
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Dump GitHub event
+        run: cat "${GITHUB_EVENT_PATH}"
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: latest
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        env: 
+          # Forces a failure in this step.
+          CODEQL_ACTION_EXTRA_OPTIONS: '{ "database": { "finalize": ["--invalid-option"] } }'
+        with:
+          expect-error: true
+  download-and-check-artifacts:
+    name: Download and check debug artifacts after failure in analyze
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v3
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          LANGUAGES="cpp csharp go java javascript python"
+          cd "./my-debug-artifacts"
+          echo "Artifacts from run:"
+          for language in $LANGUAGES; do
+            echo "- Checking $language"
+            if [[ ! -f "my-db-$language-partial.zip" ]] ; then
+              echo "Missing a partial database bundle for $language"
+              exit 1
+            fi
+            if [[ ! -d "log" ]] ; then
+              echo "Missing database initialization logs"
+              exit 1
+            fi
+            if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
+              echo "Missing logs for $language"
+              exit 1
+            fi
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/debug-artifacts-safe.yml

@@ -1,112 +0,0 @@
-# Checks logs, SARIF, and database bundle debug artifacts exist.
-name: PR Check - Debug artifact upload
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-on:
-  push:
-    branches:
-    - main
-    - releases/v*
-  pull_request:
-    types:
-    - opened
-    - synchronize
-    - reopened
-    - ready_for_review
-  merge_group:
-    types: [checks_requested]
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  upload-artifacts:
-    if: github.triggering_actor != 'dependabot[bot]'
-    strategy:
-      fail-fast: false
-      matrix:
-        version:
-        - stable-v2.20.3
-        - default
-        - linked
-        - nightly-latest
-    name: Upload debug artifacts
-    env:
-      CODEQL_ACTION_TEST_MODE: true
-    timeout-minutes: 45
-    permissions:
-      contents: read
-      # We currently need `security-events: read` to access feature flags.
-      security-events: read
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v6
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-      - uses: actions/setup-go@v6
-        with:
-          go-version: ^1.13.1
-      - name: Install .NET
-        uses: actions/setup-dotnet@v5
-        with:
-          dotnet-version: '9.x'
-      - name: Assert best-effort artifact scan completed
-        uses: ./../action/.github/actions/verify-debug-artifact-scan-completed
-      - uses: ./../action/init
-        id: init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          debug: true
-          debug-artifact-name: my-debug-artifacts
-          debug-database-name: my-db
-          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
-          languages: cpp,csharp,go,java,javascript,python,ruby
-      - name: Build code
-        run: ./build.sh
-      - uses: ./../action/analyze
-        id: analysis
-  download-and-check-artifacts:
-    name: Download and check debug artifacts
-    if: github.triggering_actor != 'dependabot[bot]'
-    needs: upload-artifacts
-    timeout-minutes: 45
-    permissions:
-      contents: read
-    runs-on: ubuntu-latest
-    steps:
-      - name: Download all artifacts
-        uses: actions/download-artifact@v8
-      - name: Check expected artifacts exist
-        run: |
-          VERSIONS="stable-v2.20.3 default linked nightly-latest"
-          LANGUAGES="cpp csharp go java javascript python"
-          for version in $VERSIONS; do
-            pushd "./my-debug-artifacts-${version//./}"
-            echo "Artifacts from version $version:"
-            for language in $LANGUAGES; do
-              echo "- Checking $language"
-              if [[ ! -f "$language.sarif" ]] ; then
-                echo "Missing a SARIF file for $language"
-                exit 1
-              fi
-              if [[ ! -f "my-db-$language.zip" ]] ; then
-                echo "Missing a database bundle for $language"
-                exit 1
-              fi
-              if [[ ! -d "$language/log" ]] ; then
-                echo "Missing logs for $language"
-                exit 1
-              fi
-            done
-            popd
-          done
-        env:
-          GO111MODULE: auto

.github/workflows/debug-artifacts.yml

@@ -0,0 +1,100 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist.
+name: PR Check - Debug artifact upload
+env:
+  # Disable Kotlin analysis while it's incompatible with Kotlin 1.8, until we find a
+  # workaround for our PR checks.
+  CODEQL_EXTRACTOR_JAVA_AGENT_DISABLE_KOTLIN: true
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      matrix:
+        version:
+        - stable-20230403
+        - stable-v2.13.5
+        - stable-v2.14.6
+        - stable-v2.15.5
+        - stable-v2.16.6
+        - default
+        - latest
+        - nightly-latest
+    name: Upload debug artifacts
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        id: init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+  download-and-check-artifacts:
+    name: Download and check debug artifacts
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v3
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          VERSIONS="stable-20230403 stable-v2.13.5 stable-v2.14.6 stable-v2.15.5 stable-v2.16.6 default latest nightly-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            pushd "./my-debug-artifacts-${version//./}"
+            echo "Artifacts from version $version:"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "$language.sarif" ]] ; then
+                echo "Missing a SARIF file for $language"
+                exit 1
+              fi
+              if [[ ! -f "my-db-$language.zip" ]] ; then
+                echo "Missing a database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

.github/workflows/deflake.yml

@@ -1,106 +0,0 @@
-# Workflow runs on main, on a release branch, and that were triggered as part of a merge group have
-# already passed CI before being merged. Therefore if they fail, we should make sure that there
-# wasn't a transient failure by rerunning the failed jobs once before investigating further.
-name: Deflake
-
-on:
-  workflow_run:
-    types: [completed]
-    # Exclude workflows that have significant side effects, like publishing releases. It's OK to
-    # retry CodeQL analysis.
-    workflows:
-      - Check Expected Release Files
-      - Code-Scanning config CLI tests
-      - CodeQL action
-      - Manual Check - go
-      - "PR Check - All-platform bundle"
-      - "PR Check - Analysis kinds"
-      - "PR Check - Analyze: 'ref' and 'sha' from inputs"
-      - "PR Check - autobuild-action"
-      - "PR Check - Autobuild direct tracing (custom working directory)"
-      - "PR Check - Autobuild working directory"
-      - "PR Check - Build mode autobuild"
-      - "PR Check - Build mode manual"
-      - "PR Check - Build mode none"
-      - "PR Check - Build mode rollback"
-      - "PR Check - Bundle: Caching checks"
-      - "PR Check - Bundle: From nightly"
-      - "PR Check - Bundle: From toolcache"
-      - "PR Check - Bundle: Zstandard checks"
-      - "PR Check - C/C\\+\\+: autoinstalling dependencies (Linux)"
-      - "PR Check - C/C\\+\\+: autoinstalling dependencies is skipped (macOS)"
-      - "PR Check - C/C\\+\\+: disabling autoinstalling dependencies (Linux)"
-      - "PR Check - Clean up database cluster directory"
-      - "PR Check - CodeQL Bundle All"
-      - "PR Check - Config export"
-      - "PR Check - Config input"
-      - "PR Check - Custom source root"
-      - "PR Check - Debug artifact upload"
-      - "PR Check - Debug artifacts after failure"
-      - "PR Check - Diagnostic export"
-      - "PR Check - Export file baseline information"
-      - "PR Check - Extractor ram and threads options test"
-      - "PR Check - Go: Custom queries"
-      - "PR Check - Go: diagnostic when Go is changed after init step"
-      - "PR Check - Go: diagnostic when `file` is not installed"
-      - "PR Check - Go: tracing with autobuilder step"
-      - "PR Check - Go: tracing with custom build steps"
-      - "PR Check - Go: tracing with legacy workflow"
-      - "PR Check - Go: workaround for indirect tracing"
-      - "PR Check - Job run UUID added to SARIF"
-      - "PR Check - Language aliases"
-      - "PR Check - Local CodeQL bundle"
-      - "PR Check - Multi-language repository"
-      - "PR Check - Overlay database init fallback"
-      - "PR Check - Packaging: Action input"
-      - "PR Check - Packaging: Config and input"
-      - "PR Check - Packaging: Config and input passed to the CLI"
-      - "PR Check - Packaging: Config file"
-      - "PR Check - Packaging: Download using registries"
-      - "PR Check - Proxy test"
-      - "PR Check - Remote config file"
-      - "PR Check - Resolve environment"
-      - "PR Check - RuboCop multi-language"
-      - "PR Check - Ruby analysis"
-      - "PR Check - Rust analysis"
-      - "PR Check - Split workflow"
-      - "PR Check - Start proxy"
-      - "PR Check - Submit SARIF after failure"
-      - "PR Check - Swift analysis using a custom build command"
-      - "PR Check - Swift analysis using autobuild"
-      - "PR Check - Test different uses of `upload-sarif`"
-      - "PR Check - Test unsetting environment variables"
-      - "PR Check - Upload-sarif: ref and sha from inputs"
-      - "PR Check - Use a custom `checkout_path`"
-      - PR Checks
-      - Query filters tests
-      - Test that the workaround for python 3.12 on windows works
-
-jobs:
-  rerun-on-failure:
-    name: Rerun failed jobs
-    if: >-
-      github.event.workflow_run.conclusion == 'failure' &&
-      github.event.workflow_run.run_attempt == 1 &&
-      (
-        github.event.workflow_run.head_branch == 'main' ||
-        startsWith(github.event.workflow_run.head_branch, 'releases/') ||
-        github.event.workflow_run.event == 'merge_group'
-      )
-    runs-on: ubuntu-slim
-    permissions:
-      actions: write
-    steps:
-      - name: Rerun failed jobs in ${{ github.event.workflow_run.name }}
-        env:
-          GH_TOKEN: ${{ github.token }}
-          GH_REPO: ${{ github.repository }}
-          RUN_ID: ${{ github.event.workflow_run.id }}
-          RUN_NAME: ${{ github.event.workflow_run.name }}
-          RUN_URL: ${{ github.event.workflow_run.html_url }}
-        run: |
-          echo "Rerunning failed jobs for workflow run ${RUN_ID}"
-          gh run rerun "${RUN_ID}" --failed
-          echo "### Reran failed jobs :recycle:" >> "$GITHUB_STEP_SUMMARY"
-          echo "" >> "$GITHUB_STEP_SUMMARY"
-          echo "Workflow: [${RUN_NAME}](${RUN_URL})" >> "$GITHUB_STEP_SUMMARY"

.github/workflows/expected-queries-runs.yml

@@ -0,0 +1,48 @@
+name: Check queries that ran
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+
+jobs:
+  expected-queries:
+    name: Expected Queries Tests
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: latest
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+        upload-database: false
+        upload: never
+
+    - name: Check Sarif
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/incomplete-hostname-regexp,js/path-injection
+        queries-not-run: foo,bar

.github/workflows/label-pr-size.yml

@@ -1,27 +0,0 @@
-name: Label PR with size
-
-on:
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - edited
-      - ready_for_review
-
-permissions:
-  contents: read
-  pull-requests: write
-
-jobs:
-  sizeup:
-    name: Label PR with size
-    runs-on: ubuntu-slim
-    if: github.event.pull_request.merged != true
-
-    steps:
-      - name: Run sizeup
-        uses: lerebear/sizeup-action@b7beb3dd273e36039e16e48e7bc690c189e61951 # 0.8.12
-        with:
-          token: "${{ secrets.GITHUB_TOKEN }}"
-          configuration-file-path: ".github/sizeup.yml"

.github/workflows/post-release-mergeback.yml

@@ -3,7 +3,7 @@
 #    tag
 # 2. Updates the `vN` tag to refer to this merge commit.
 # 3. Iff vN == vLatest, merges any changes from the release back into the main branch.
-#    Typically, this is two commits – one to update the version number and one to rebuild.
+#    Typically, this is two commits – one to update the version number and one to update dependencies.
 name: Tag release and merge back
 
 on:
@@ -18,23 +18,14 @@ on:
     branches:
       - releases/v*
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   merge-back:
     runs-on: ubuntu-latest
-    environment: Automation
     if: github.repository == 'github/codeql-action'
     env:
       BASE_BRANCH: "${{ github.event.inputs.baseBranch || 'main' }}"
       HEAD_BRANCH: "${{ github.head_ref || github.ref }}"
 
-    permissions:
-      contents: write # needed to create tags and push commits
-      pull-requests: write
-
     steps:
       - name: Dump environment
         run: env
@@ -44,13 +35,10 @@ jobs:
           GITHUB_CONTEXT: '${{ toJson(github) }}'
         run: echo "${GITHUB_CONTEXT}"
 
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # ensure we have all tags and can push commits
-      - uses: actions/setup-node@v6
-      - uses: actions/setup-python@v6
-        with:
-          python-version: '3.12'
+      - uses: actions/setup-node@v4
 
       - name: Update git config
         run: |
@@ -120,43 +108,45 @@ jobs:
           # - `--force` since we're overwriting the `vN` tag
           git push origin --atomic --force refs/tags/"${VERSION}" refs/tags/"${major_version_tag}"
 
-      - name: Prepare partial Changelog
+      - name: Create mergeback branch
+        if: ${{ steps.check.outputs.exists != 'true' && endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
         env:
-          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
-        run: |
-          python .github/workflows/script/prepare_changelog.py CHANGELOG.md > $PARTIAL_CHANGELOG
-
-          echo "::group::Partial CHANGELOG"
-          cat $PARTIAL_CHANGELOG
-          echo "::endgroup::"
-
-      - name: Generate token
-        uses: actions/create-github-app-token@v3.1.1
-        id: app-token
-        with:
-          app-id: ${{ vars.AUTOMATION_APP_ID }}
-          private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
-
-      - name: Create the GitHub release
-        if: steps.check.outputs.exists != 'true'
-        env:
-          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
           VERSION: "${{ steps.getVersion.outputs.version }}"
-          GH_TOKEN: ${{ steps.app-token.outputs.token }}
+          NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
         run: |
-          # Do not mark this release as latest. The most recent CLI release must be marked as latest.
-          gh release create \
-            "$VERSION" \
-            --latest=false \
-            --title "$VERSION" \
-            --notes-file "$PARTIAL_CHANGELOG"
+          set -exu
+          pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
+          pr_body=$(cat << EOF
+            This PR bumps the version number and updates the changelog after the ${VERSION} release.
 
-      - name: Create mergeback branch and PR
-        if: ${{ endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
-        uses: ./.github/actions/prepare-mergeback-branch
-        with:
-          base: "${{ env.BASE_BRANCH }}"
-          head: "${{ env.HEAD_BRANCH }}"
-          branch: "${{ steps.getVersion.outputs.newBranch }}"
-          version: "${{ steps.getVersion.outputs.version }}"
-          token: "${{ secrets.GITHUB_TOKEN }}"
+            Please do the following:
+
+            - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.
+            - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.
+            - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
+            - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
+                  selected rather than "Squash and merge" or "Rebase and merge".
+          EOF
+          )
+
+          # Update the version number ready for the next release
+          npm version patch --no-git-tag-version
+
+          # Update the changelog, adding a new version heading directly above the most recent existing one
+          awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
+          git add .
+          git commit -m "Update changelog and version after ${VERSION}"
+
+          git push origin "${NEW_BRANCH}"
+
+          # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
+          # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
+          gh pr create \
+            --head "${NEW_BRANCH}" \
+            --base "${BASE_BRANCH}" \
+            --title "${pr_title}" \
+            --label "Update dependencies" \
+            --body "${pr_body}" \
+            --assignee "${GITHUB_ACTOR}" \
+            --draft

.github/workflows/pr-checks.yml

@@ -2,121 +2,118 @@ name: PR Checks
 
 on:
   push:
+    branches: [main, releases/v*]
   pull_request:
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
-  merge_group:
-    types: [checks_requested]
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
-  unit-tests:
-    name: Unit Tests
-    if: github.triggering_actor != 'dependabot[bot]'
+  check-js:
+    name: Check JS
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+
+    strategy:
+      matrix:
+        node-types-version: [16.11, current] # we backport this matrix job in order to maintain the same check names
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Lint
+        run: npm run-script lint
+
+      - name: Update version of @types/node
+        if: matrix.node-types-version != 'current'
+        env:
+          NODE_TYPES_VERSION: ${{ matrix.node-types-version }}
+        run: |
+          # Export `NODE_TYPES_VERSION` so it's available to jq
+          export NODE_TYPES_VERSION="${NODE_TYPES_VERSION}"
+          contents=$(jq '.devDependencies."@types/node" = env.NODE_TYPES_VERSION' package.json)
+          echo "${contents}" > package.json
+          # Usually we run `npm install` on macOS to ensure that we pick up macOS-only dependencies.
+          # However we're not checking in the updated lockfile here, so it's fine to run
+          # `npm install` on Linux.
+          npm install
+
+          if [ ! -z "$(git status --porcelain)" ]; then
+            git config --global user.email "github-actions@github.com"
+            git config --global user.name "github-actions[bot]"
+            # The period in `git add --all .` ensures that we stage deleted files too.
+            git add --all .
+            git commit -m "Use @types/node=${NODE_TYPES_VERSION}"
+          fi
+
+      - name: Check generated JS
+        if: matrix.node-types-version != 'current' # we do not need to test the newer node on the v2 branch
+        run: .github/workflows/script/check-js.sh
+
+  check-node-modules:
+    name: Check modules up to date
+    runs-on: macos-latest
+    timeout-minutes: 45
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Check node modules up to date
+        run: .github/workflows/script/check-node-modules.sh
+
+  check-file-contents:
+    name: Check file contents
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.11
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          # When updating this, update the autogenerated code header in `sync.py` too.
+          pip install ruamel.yaml==0.17.31
+
+      # Ensure the generated PR check workflows are up to date.
+      - name: Verify PR checks up to date
+        run: .github/workflows/script/verify-pr-checks.sh
+
+  npm-test:
+    name: Unit Test
+    needs: [check-js, check-node-modules]
     strategy:
-      fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        node-version: [20, 24]
-    permissions:
-      contents: read
-      security-events: write # needed to upload ESLint results
     runs-on: ${{ matrix.os }}
     timeout-minutes: 45
 
     steps:
-      - name: Prepare git (Windows)
-        if: runner.os == 'Windows'
-        run: git config --global core.autocrlf false
-
-      - uses: actions/checkout@v6
-
-      - name: Set up Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: ${{ matrix.node-version }}
-          cache: 'npm'
-
-      - name: Install dependencies
+      - uses: actions/checkout@v4
+      - name: npm test
         run: |
-          # Use the system Bash shell to ensure we can run commands like `npm ci`
-          # that are not available in the default shell on Windows.
+          # Run any commands referenced in package.json using Bash, otherwise
+          # we won't be able to find them on Windows.
           npm config set script-shell bash
-          npm ci
-
-      - name: Verify compiled JS up to date
-        run: .github/workflows/script/check-js.sh
-
-      - name: Run unit tests
-        if: always()
-        run: npm test
-
-      - name: Lint
-        if: always() && matrix.os != 'windows-latest'
-        run: npm run lint-ci
-
-      - name: Upload sarif
-        uses: github/codeql-action/upload-sarif@v4
-        if: matrix.os == 'ubuntu-latest' && matrix.node-version == 24
-        with:
-          sarif_file: eslint.sarif
-          category: eslint
-
-  # Verifying the PR checks are up-to-date requires Node 24. The PR checks are not dependent
-  # on the main codebase and therefore do not need to be run as part of the same matrix that
-  # we use for the `unit-tests` job.
-  verify-pr-checks:
-    name: Verify PR checks
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-    runs-on: ubuntu-slim
-    timeout-minutes: 10
-
-    steps:
-      - name: Prepare git (Windows)
-        if: runner.os == 'Windows'
-        run: git config --global core.autocrlf false
-
-      - name: Checkout repository
-        uses: actions/checkout@v6
-
-      - name: Set up Node.js
-        uses: actions/setup-node@v6
-        with:
-          node-version: 24
-          cache: 'npm'
-
-      - name: Install dependencies
-        run: npm ci
-
-      - name: Verify PR checks up to date
-        if: always()
-        run: .github/workflows/script/verify-pr-checks.sh
-
-      - name: Run pr-checks tests
-        if: always()
-        working-directory: pr-checks
-        run: npx tsx --test
+          npm test
 
   check-node-version:
-    if: github.triggering_actor != 'dependabot[bot]'
+    if: ${{ github.event.pull_request }}
     name: Check Action Node versions
     runs-on: ubuntu-latest
     timeout-minutes: 45
     env:
       BASE_REF: ${{ github.base_ref }}
 
-    permissions:
-      contents: read
-
     steps:
-      - uses: actions/checkout@v6
+      - uses: actions/checkout@v4
       - id: head-version
         name: Verify all Actions use the same Node version
         run: |
@@ -131,7 +128,7 @@ jobs:
       - id: checkout-base
         name: 'Backport: Check out base ref'
         if: ${{ startsWith(github.head_ref, 'backport-') }}
-        uses: actions/checkout@v6
+        uses: actions/checkout@v4
         with:
           ref: ${{ env.BASE_REF }}
 

.github/workflows/prepare-release.yml

@@ -1,77 +0,0 @@
-name: Prepare release
-on:
-  workflow_call:
-    outputs:
-      version:
-        description: "The version that is being released."
-        value: ${{ jobs.prepare.outputs.version }}
-      major_version:
-        description: "The major version of the release."
-        value: ${{ jobs.prepare.outputs.major_version }}
-      latest_tag:
-        description: "The most recent, existing release tag."
-        value: ${{ jobs.prepare.outputs.latest_tag }}
-      backport_source_branch:
-        description: "The release branch for the given tag."
-        value: ${{ jobs.prepare.outputs.backport_source_branch }}
-      backport_target_branches:
-        description: "JSON encoded list of branches to target with backports."
-        value: ${{ jobs.prepare.outputs.backport_target_branches }}
-
-  push:
-    paths:
-      - .github/workflows/prepare-release.yml
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  prepare:
-    name: "Prepare release"
-    runs-on: ubuntu-latest
-    if: github.repository == 'github/codeql-action'
-
-    permissions:
-      contents: read
-
-    outputs:
-      version: ${{ steps.versions.outputs.version }}
-      major_version: ${{ steps.versions.outputs.major_version }}
-      latest_tag: ${{ steps.versions.outputs.latest_tag }}
-      backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}
-      backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v6
-        with:
-          fetch-depth: 0 # Need full history for calculation of diffs
-
-      - name: Configure runner for release
-        uses: ./.github/actions/release-initialise
-
-      - name: Get version tags
-        id: versions
-        run: |
-          VERSION="v$(jq '.version' -r 'package.json')"
-          echo "version=${VERSION}" >> $GITHUB_OUTPUT
-          MAJOR_VERSION=$(cut -d '.' -f1 <<< "${VERSION}")
-          echo "major_version=${MAJOR_VERSION}" >> $GITHUB_OUTPUT
-          LATEST_TAG=$(git tag --sort=-v:refname | grep -E '^v[0-9]+\.[0-9]+\.[0-9]+' | head -1)
-          echo "latest_tag=${LATEST_TAG}" >> $GITHUB_OUTPUT
-
-      - name: Determine older release branches
-        id: branches
-        uses: ./.github/actions/release-branches
-        with:
-          major_version: ${{ steps.versions.outputs.major_version }}
-          latest_tag: ${{ steps.versions.outputs.latest_tag }}
-
-      - name: Print release information
-        run: |
-          echo 'version: ${{ steps.versions.outputs.version }}'
-          echo 'major_version: ${{ steps.versions.outputs.major_version }}'
-          echo 'latest_tag: ${{ steps.versions.outputs.latest_tag }}'
-          echo 'backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}'
-          echo 'backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}'

.github/workflows/publish-immutable-action.yml

@@ -1,27 +0,0 @@
-name: 'Publish Immutable Action Version'
-
-on:
-  push:
-    tags:
-      # Match version tags, but not the major version tags.
-      - 'v[0-9]+.**'
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  publish:
-    runs-on: ubuntu-slim
-    permissions:
-      contents: read
-      id-token: write
-      packages: write
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v6
-
-      - name: Publish immutable release
-        id: publish
-        uses: actions/publish-immutable-action@v0.0.4

.github/workflows/python312-windows.yml

@@ -7,35 +7,22 @@ on:
     # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
-  merge_group:
-    types: [checks_requested]
   schedule:
     # Weekly on Monday.
     - cron: '0 0 * * 1'
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   test-setup-python-scripts:
-    if: github.triggering_actor != 'dependabot[bot]'
-    env:
-      CODEQL_ACTION_TEST_MODE: true
     timeout-minutes: 45
-    permissions:
-      contents: read
-      # We currently need `security-events: read` to access feature flags.
-      security-events: read
     runs-on: windows-latest
 
     steps:
-    - uses: actions/setup-python@v6
+    - uses: actions/setup-python@v5
       with:
         python-version: 3.12
 
-    - uses: actions/checkout@v6
+    - uses: actions/checkout@v4
 
     - name: Prepare test
       uses: ./.github/actions/prepare-test
@@ -45,8 +32,11 @@ jobs:
     - name: Initialize CodeQL
       uses: ./../action/init
       with:
-        tools: linked
+        tools: latest
         languages: python
 
     - name: Analyze
       uses: ./../action/analyze
+      with:
+        upload: false
+        upload-database: false