This commit updates common_chat_templates_apply_jinja to use the
the add_bos and add_eos parameters from the chat template instead of
the inputs.
The motivation for this is that currently if the `add_bos` and `add_eos`
from the input parameters are used it is possible to there will be a
missmatch between the model and the chat template which can lead to the
the removal of duplicate BOS/EOS tokens in chat.cpp `apply` to not
happen leading to two BOS tokens being added to the template.
5e6229a840