Test switching windows-latest to windows-2025

.github/actions/check-codescanning-config/index.ts

@@ -6,16 +6,6 @@ import * as assert from 'assert'
 
 const actualConfig = loadActualConfig()
 
-function sortConfigArrays(config) {
-  for (const key of Object.keys(config)) {
-    const value = config[key];
-    if (key === 'queries' && Array.isArray(value)) {
-      config[key] = value.sort();
-    }
-  }
-  return config;
-}
-
 const rawExpectedConfig = process.argv[3].trim()
 if (!rawExpectedConfig) {
   core.setFailed('No expected configuration provided')
@@ -28,8 +18,8 @@ if (!rawExpectedConfig) {
 const expectedConfig = rawExpectedConfig ? JSON.parse(rawExpectedConfig) : undefined;
 
 assert.deepStrictEqual(
-  sortConfigArrays(actualConfig),
-  sortConfigArrays(expectedConfig),
+  actualConfig,
+  expectedConfig,
   'Expected configuration does not match actual configuration'
 );
 

.github/actions/check-sarif/action.yml

@@ -16,5 +16,5 @@ inputs:
       Comma separated list of query ids that should NOT be included in this SARIF file.
 
 runs:
-  using: node24
+  using: node20
   main: index.js

.github/actions/prepare-mergeback-branch/action.yml

@@ -1,80 +0,0 @@
-name: "Prepare mergeback branch"
-description: Prepares a mergeback branch and opens a PR for it
-inputs:
-  base:
-    description: "The name of the base branch"
-    required: true
-  head:
-    description: "The name of the head branch"
-    required: true
-  branch:
-    description: "The name of the branch to create."
-    required: true
-  version:
-    description: "The new version"
-    required: true
-  token:
-    description: "The token to use"
-    required: true
-  dry-run:
-    description: "Set to true to skip creating the PR. The branch will still be pushed."
-    default: "false"
-runs:
-  using: composite
-  steps:
-    - name: Create mergeback branch
-      shell: bash
-      env:
-        VERSION: "${{ inputs.version }}"
-        NEW_BRANCH: "${{ inputs.branch }}"
-      run: |
-        set -exu
-
-        # Ensure we are on the new branch
-        git checkout "${NEW_BRANCH}"
-
-        # Update the version number ready for the next release
-        npm version patch --no-git-tag-version
-
-        # Update the changelog, adding a new version heading directly above the most recent existing one
-        awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
-        git add .
-        git commit -m "Update changelog and version after ${VERSION}"
-
-        git push origin "${NEW_BRANCH}"
-
-    - name: Create PR
-      shell: bash
-      if: inputs.dry-run != 'true'
-      env:
-        VERSION: "${{ inputs.version }}"
-        BASE_BRANCH: "${{ inputs.base }}"
-        HEAD_BRANCH: "${{ inputs.head }}"
-        NEW_BRANCH: "${{ inputs.branch }}"
-        GITHUB_TOKEN: "${{ inputs.token }}"
-      run: |
-        set -exu
-        pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
-        pr_body=$(cat << EOF
-          This PR bumps the version number and updates the changelog after the ${VERSION} release.
-
-          Please do the following:
-
-          - [ ] Remove and re-add the "Rebuild" label to the PR to trigger just this workflow.
-          - [ ] Wait for the "Rebuild" workflow to push a commit updating the distribution files.
-          - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
-          - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
-                selected rather than "Squash and merge" or "Rebase and merge".
-        EOF
-        )
-
-        # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
-        # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
-        gh pr create \
-          --head "${NEW_BRANCH}" \
-          --base "${BASE_BRANCH}" \
-          --title "${pr_title}" \
-          --label "Rebuild" \
-          --body "${pr_body}" \
-          --assignee "${GITHUB_ACTOR}" \
-          --draft

.github/actions/prepare-test/action.yml

@@ -2,7 +2,7 @@ name: "Prepare test"
 description: Performs some preparation to run tests
 inputs:
   version:
-    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'toolcache', 'nightly', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
+    description: "The version of the CodeQL CLI to use. Can be 'linked', 'default', 'nightly-latest', 'nightly-YYYYMMDD', or 'stable-vX.Y.Z"
     required: true
   use-all-platform-bundle:
     description: "If true, we output a tools URL with codeql-bundle.tar.gz file rather than platform-specific URL"
@@ -35,34 +35,37 @@ runs:
       run: |
         set -e # Fail this Action if `gh release list` fails.
 
-        if [[ "$VERSION" == "nightly" || "$VERSION" == "nightly-latest" ]]; then
-          echo "tools-url=nightly" >> "$GITHUB_OUTPUT"
-          exit 0
-        elif [[ "$VERSION" == "linked" ]]; then
+        if [[ "$VERSION" == "linked" ]]; then
           echo "tools-url=linked" >> "$GITHUB_OUTPUT"
           exit 0
-        elif [[ "$VERSION" == "toolcache" ]]; then
-          echo "tools-url=toolcache" >> "$GITHUB_OUTPUT"
-          exit 0
         elif [[ "$VERSION" == "default" ]]; then
           echo "tools-url=" >> "$GITHUB_OUTPUT"
           exit 0
         fi
 
+        if [[ "$VERSION" == "nightly-latest" && "$RUNNER_OS" != "Windows" ]]; then
+          extension="tar.zst"
+        else
+          extension="tar.gz"
+        fi
+
         if [[ "$USE_ALL_PLATFORM_BUNDLE" == "true" ]]; then
-          artifact_name="codeql-bundle.tar.gz"
+          artifact_name="codeql-bundle.$extension"
         elif [[ "$RUNNER_OS" == "Linux" ]]; then
-          artifact_name="codeql-bundle-linux64.tar.gz"
+          artifact_name="codeql-bundle-linux64.$extension"
         elif [[ "$RUNNER_OS" == "macOS" ]]; then
-          artifact_name="codeql-bundle-osx64.tar.gz"
+          artifact_name="codeql-bundle-osx64.$extension"
         elif [[ "$RUNNER_OS" == "Windows" ]]; then
-          artifact_name="codeql-bundle-win64.tar.gz"
+          artifact_name="codeql-bundle-win64.$extension"
         else
           echo "::error::Unrecognized OS $RUNNER_OS"
           exit 1
         fi
 
-        if [[ "$VERSION" == *"nightly"* ]]; then
+        if [[ "$VERSION" == "nightly-latest" ]]; then
+          tag=`gh release list --repo dsp-testing/codeql-cli-nightlies -L 1 | cut -f 3`
+          echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/$tag/$artifact_name" >> $GITHUB_OUTPUT
+        elif [[ "$VERSION" == *"nightly"* ]]; then
           version=`echo "$VERSION" | sed -e 's/^.*\-//'`
           echo "tools-url=https://github.com/dsp-testing/codeql-cli-nightlies/releases/download/codeql-bundle-$version/$artifact_name" >> $GITHUB_OUTPUT
         elif [[ "$VERSION" == *"stable"* ]]; then

.github/actions/setup-swift/action.yml

@@ -0,0 +1,39 @@
+name: "Set up Swift on Linux"
+description: Sets up an appropriate Swift version on Linux.
+inputs:
+  codeql-path:
+    description: Path to the CodeQL CLI executable.
+    required: true
+runs:
+  using: "composite"
+  steps:
+    - name: Get Swift version
+      id: get_swift_version
+      if: runner.os == 'Linux'
+      shell: bash
+      env:
+        CODEQL_PATH: ${{ inputs.codeql-path }}
+      run: |
+        SWIFT_EXTRACTOR_DIR="$("$CODEQL_PATH" resolve languages --format json | jq -r '.swift[0]')"
+        if [ $SWIFT_EXTRACTOR_DIR = "null" ]; then
+          VERSION="null"
+        else
+          VERSION="$("$SWIFT_EXTRACTOR_DIR/tools/linux64/extractor" --version | awk '/version/ { print $3 }')"
+          # Specify 5.x.0, otherwise setup Action will default to latest minor version.
+          if [ $VERSION = "5.7" ]; then
+            VERSION="5.7.0"
+          elif [ $VERSION = "5.8" ]; then
+            VERSION="5.8.0"
+          elif [ $VERSION = "5.9" ]; then
+            VERSION="5.9.0"
+          # setup-swift does not yet support v5.9.1 Remove this when it does.
+          elif [ $VERSION = "5.9.1" ]; then
+            VERSION="5.9.0"
+          fi
+        fi
+        echo "version=$VERSION" | tee -a $GITHUB_OUTPUT
+
+    - uses: redsun82/setup-swift@362f49f31da2f5f4f851657046bdd1290d03edc8 # Please update the corresponding SHA in the CLI's CodeQL Action Integration Test.
+      if: runner.os == 'Linux' && steps.get_swift_version.outputs.version != 'null'
+      with:
+        swift-version: "${{ steps.get_swift_version.outputs.version }}"

.github/codeql/codeql-actions-config.yml

@@ -0,0 +1,4 @@
+# Configuration for the CodeQL Actions Queries
+name: "CodeQL Actions Queries config"
+queries:
+  - uses: security-and-quality

.github/codeql/codeql-config.yml

@@ -7,9 +7,9 @@ queries:
   # we include both even though one is a superset of the
   # other, because we're testing the parsing logic and
   # that the suites exist in the codeql bundle.
-  - uses: security-and-quality
   - uses: security-experimental
   - uses: security-extended
+  - uses: security-and-quality
 paths-ignore:
-  - lib
   - tests
+  - lib

.github/dependabot.yml

@@ -5,12 +5,15 @@ updates:
     schedule:
       interval: weekly
     labels:
-      - Rebuild
+      - Update dependencies
     # Ignore incompatible dependency updates
     ignore:
       # There is a type incompatibility issue between v0.0.9 and our other dependencies.
       - dependency-name: "@octokit/plugin-retry"
         versions: ["~6.0.0"]
+      # v7 requires ESM
+      - dependency-name: "del"
+        versions: ["^7.0.0"]
       # This is broken due to the way configuration files have changed. 
       # This might be fixed when we move to eslint v9.
       - dependency-name: "eslint-plugin-import"
@@ -20,14 +23,18 @@ updates:
         patterns:
           - "*"
   - package-ecosystem: github-actions
-    directories:
-      - "/.github/workflows"
-      - "/.github/actions"
+    directory: "/"
     schedule:
       interval: weekly
-    labels:
-      - Rebuild
     groups:
       actions:
         patterns:
           - "*"
+  - package-ecosystem: github-actions
+    directory: "/.github/actions/setup-swift/" # All subdirectories outside of "/.github/workflows" must be explicitly included.
+    schedule:
+      interval: weekly
+    groups:
+      actions-setup-swift:
+        patterns:
+          - "*"

.github/pull_request_template.md

@@ -1,13 +1,4 @@
-<!--
-    For GitHub staff: Remember that this is a public repository. Do not link to internal resources.
-                      If necessary, link to this PR from an internal issue and include further details there.
 
-    Everyone: Include a summary of the context of this change, what it aims to accomplish, and why you
-              chose the approach you did if applicable. Indicate any open questions you want to answer
-              during the review process and anything you want reviewers to pay particular attention to.
-
-    See https://github.com/github/codeql-action/blob/main/CONTRIBUTING.md for additional information.
--->
 
 ### Risk assessment
 
@@ -16,44 +7,6 @@ For internal use only. Please select the risk level of this change:
 - **Low risk:** Changes are fully under feature flags, or have been fully tested and validated in pre-production environments and are highly observable, or are documentation or test only.
 - **High risk:** Changes are not fully under feature flags, have limited visibility and/or cannot be tested outside of production.
 
-#### Which use cases does this change impact?
-
-<!-- Delete options that don't apply. -->
-
-- **Advanced setup** - Impacts users who have custom workflows.
-- **Default setup** - Impacts users who use default setup.
-- **Code Scanning** - Impacts Code Scanning (i.e. `analysis-kinds: code-scanning`).
-- **Code Quality** - Impacts Code Quality (i.e. `analysis-kinds: code-quality`).
-- **Third-party analyses** - Impacts third-party analyses (i.e. `upload-sarif`).
-- **GHES** - Impacts GitHub Enterprise Server.
-
-#### How did/will you validate this change?
-
-<!-- Delete options that don't apply. -->
-
-- **Test repository** - This change will be tested on a test repository before merging.
-- **Unit tests** - I am depending on unit test coverage (i.e. tests in `.test.ts` files).
-- **End-to-end tests** - I am depending on PR checks (i.e. tests in `pr-checks`).
-- **Other** - Please provide details.
-- **None** - I am not validating these changes.
-
-#### If something goes wrong after this change is released, what are the mitigation and rollback strategies?
-
-<!-- Delete strategies that don't apply. -->
-
-- **Feature flags** - All new or changed code paths can be fully disabled with corresponding feature flags.
-- **Rollback** - Change can only be disabled by rolling back the release or releasing a new version with a fix.
-- **Other** - Please provide details.
-
-#### How will you know if something goes wrong after this change is released?
-
-<!-- Delete options that don't apply. -->
-
-- **Telemetry** - I rely on existing telemetry or have made changes to the telemetry.
-    - **Dashboards** - I will watch relevant dashboards for issues after the release. Consider whether this requires this change to be released at a particular time rather than as part of a regular release.
-    - **Alerts** - New or existing monitors will trip if something goes wrong with this change.
-- **Other** - Please provide details.
-
 ### Merge / deployment checklist
 
 - Confirm this change is backwards compatible with existing workflows.

.github/update-release-branch.py

@@ -97,8 +97,8 @@ def open_pr(
   body.append(' - [ ] Ensure the docs team is aware of any documentation changes that need to be released.')
 
   if not is_primary_release:
-    body.append(' - [ ] Remove and re-add the "Rebuild" label to the PR to trigger just this workflow.')
-    body.append(' - [ ] Wait for the "Rebuild" workflow to push a commit updating the distribution files.')
+    body.append(' - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.')
+    body.append(' - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.')
 
   body.append(' - [ ] Mark the PR as ready for review to trigger the full set of PR checks.')
   body.append(' - [ ] Approve and merge this PR. Make sure `Create a merge commit` is selected rather than `Squash and merge` or `Rebase and merge`.')
@@ -108,7 +108,7 @@ def open_pr(
     body.append(' - [ ] Merge all backport PRs to older release branches, that will automatically be created once this PR is merged.')
 
   title = f'Merge {source_branch} into {target_branch}'
-  labels = ['Rebuild'] if not is_primary_release else []
+  labels = ['Update dependencies'] if not is_primary_release else []
 
   # Create the pull request
   # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft so that
@@ -389,7 +389,7 @@ def main():
 
     # Migrate the package version number from a vLatest version number to a vOlder version number
     print(f'Setting version number to {version} in package.json')
-    replace_version_package_json(get_current_version(), version) # We rely on the `Rebuild` workflow to update package-lock.json
+    replace_version_package_json(get_current_version(), version) # We rely on the `Update dependencies` workflow to update package-lock.json
     run_git('add', 'package.json')
 
     # Migrate the changelog notes from vLatest version numbers to vOlder version numbers

.github/workflows/__all-platform-bundle.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   all-platform-bundle:
     strategy:
@@ -48,12 +42,7 @@ jobs:
         include:
           - os: ubuntu-latest
             version: nightly-latest
-          - os: macos-latest
-            version: nightly-latest
-          - os: windows-latest
-            version: nightly-latest
     name: All-platform bundle
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -70,7 +59,7 @@ jobs:
           use-all-platform-bundle: 'true'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -81,6 +70,7 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__analyze-ref-input.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   analyze-ref-input:
     strategy:
@@ -48,8 +42,11 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
     name: "Analyze: 'ref' and 'sha' from inputs"
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,7 +63,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -77,6 +74,7 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:

.github/workflows/__autobuild-action.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   autobuild-action:
     strategy:
@@ -40,10 +34,9 @@ jobs:
             version: linked
           - os: macos-latest
             version: linked
-          - os: windows-latest
+          - os: windows-2025
             version: linked
     name: autobuild-action
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -74,6 +67,7 @@ jobs:
           CORECLR_PROFILER_PATH_64: ''
       - uses: ./../action/analyze
       - name: Check database
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d csharp ]]; then

.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Java to install
         required: false
         default: '17'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   autobuild-direct-tracing-with-working-dir:
     strategy:
@@ -48,14 +42,13 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-          - os: windows-latest
+          - os: windows-2025
             version: linked
           - os: ubuntu-latest
             version: nightly-latest
-          - os: windows-latest
+          - os: windows-2025
             version: nightly-latest
     name: Autobuild direct tracing (custom working directory)
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -72,11 +65,12 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Java
-        uses: actions/setup-java@v5
+        uses: actions/setup-java@v4
         with:
           java-version: ${{ inputs.java-version || '17' }}
           distribution: temurin
       - name: Test setup
+        shell: bash
         run: |
           # Make sure that Gradle build succeeds in autobuild-dir ...
           cp -a ../action/tests/java-repo autobuild-dir
@@ -88,6 +82,7 @@ jobs:
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Check that indirect tracing is disabled
+        shell: bash
         run: |
           if [[ ! -z "${CODEQL_RUNNER}" ]]; then
             echo "Expected indirect tracing to be disabled, but the" \

.github/workflows/__autobuild-direct-tracing.yml

@@ -0,0 +1,99 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+  workflow_call:
+    inputs:
+      java-version:
+        type: string
+        description: The version of Java to install
+        required: false
+        default: '17'
+jobs:
+  autobuild-direct-tracing:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-2025
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
+    name: Autobuild direct tracing
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Java
+        uses: actions/setup-java@v4
+        with:
+          java-version: ${{ inputs.java-version || '17' }}
+          distribution: temurin
+      - name: Set up Java test repo configuration
+        shell: bash
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Check that indirect tracing is disabled
+        shell: bash
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-autobuild.yml

@@ -21,25 +21,9 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
+    inputs: {}
   workflow_call:
-    inputs:
-      java-version:
-        type: string
-        description: The version of Java to install
-        required: false
-        default: '17'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
+    inputs: {}
 jobs:
   build-mode-autobuild:
     strategy:
@@ -47,15 +31,8 @@ jobs:
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
-          - os: windows-latest
-            version: linked
-          - os: ubuntu-latest
-            version: nightly-latest
-          - os: windows-latest
             version: nightly-latest
     name: Build mode autobuild
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -71,11 +48,6 @@ jobs:
           version: ${{ matrix.version }}
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
-      - name: Install Java
-        uses: actions/setup-java@v5
-        with:
-          java-version: ${{ inputs.java-version || '17' }}
-          distribution: temurin
       - name: Set up Java test repo configuration
         run: |
           mv * .github ../action/tests/multi-language-repo/
@@ -90,11 +62,6 @@ jobs:
           languages: java
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
-      - name: Install yq
-        if: runner.os == 'Windows'
-        run: |
-          choco install yq -y
-
       - name: Validate database build mode
         run: |
           metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
@@ -104,14 +71,6 @@ jobs:
             exit 1
           fi
 
-      - name: Check that indirect tracing is disabled
-        run: |
-          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
-            echo "Expected indirect tracing to be disabled, but the" \
-              "CODEQL_RUNNER environment variable is set."
-            exit 1
-          fi
-
       - uses: ./../action/analyze
     env:
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__build-mode-manual.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-manual:
     strategy:
@@ -49,7 +43,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode manual
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,7 +59,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -88,6 +81,7 @@ jobs:
           fi
 
       - name: Build code
+        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze

.github/workflows/__build-mode-none.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-none:
     strategy:
@@ -41,7 +35,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode none
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read

.github/workflows/__build-mode-rollback.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   build-mode-rollback:
     strategy:
@@ -39,7 +33,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Build mode rollback
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read

.github/workflows/__bundle-from-toolcache.yml

@@ -1,86 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: 'PR Check - Bundle: From toolcache'
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs: {}
-  workflow_call:
-    inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  bundle-from-toolcache:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: toolcache
-    name: 'Bundle: From toolcache'
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v5
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install @actions/tool-cache
-        run: npm install @actions/tool-cache
-      - name: Check toolcache contains CodeQL
-        continue-on-error: true
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            if (allCodeqlVersions.length === 0) {
-              throw new Error(`CodeQL could not be found in the toolcache`);
-            }
-      - id: init
-        uses: ./../action/init
-        with:
-          languages: javascript
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-      - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v8
-        with:
-          script: |
-            const toolcache = require('@actions/tool-cache');
-            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
-            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
-            if (allCodeqlVersions.length === 0) {
-              throw new Error('CodeQL not found in toolcache');
-            }
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__bundle-toolcache.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   bundle-toolcache:
     strategy:
@@ -40,10 +34,9 @@ jobs:
             version: linked
           - os: ubuntu-latest
             version: linked
-          - os: windows-latest
+          - os: windows-2025
             version: linked
     name: 'Bundle: Caching checks'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -60,7 +53,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         with:
           script: |
             const fs = require('fs');
@@ -70,7 +63,7 @@ jobs:
       - name: Install @actions/tool-cache
         run: npm install @actions/tool-cache
       - name: Check toolcache does not contain CodeQL
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         with:
           script: |
             const toolcache = require('@actions/tool-cache');
@@ -89,7 +82,7 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check CodeQL is installed within the toolcache
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         with:
           script: |
             const toolcache = require('@actions/tool-cache');

.github/workflows/__bundle-zstd.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   bundle-zstd:
     strategy:
@@ -40,10 +34,9 @@ jobs:
             version: linked
           - os: ubuntu-latest
             version: linked
-          - os: windows-latest
+          - os: windows-2025
             version: linked
     name: 'Bundle: Zstandard checks'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -60,7 +53,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Remove CodeQL from toolcache
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         with:
           script: |
             const fs = require('fs');
@@ -85,7 +78,7 @@ jobs:
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check diagnostic with expected tools URL appears in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:

.github/workflows/__cleanup-db-cluster-dir.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cleanup-db-cluster-dir:
     strategy:
@@ -39,7 +33,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Clean up database cluster directory
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read

.github/workflows/__config-export.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   config-export:
     strategy:
@@ -38,10 +32,17 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
     name: Config export
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -73,7 +74,7 @@ jobs:
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check config properties appear in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:

.github/workflows/__config-input.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   config-input:
     strategy:
@@ -39,7 +33,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Config input
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -48,13 +41,6 @@ jobs:
     steps:
       - name: Check out repository
         uses: actions/checkout@v5
-      - name: Install Node.js
-        uses: actions/setup-node@v5
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test

.github/workflows/__cpp-deptrace-disabled.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-disabled:
     strategy:
@@ -43,7 +37,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'C/C++: disabling autoinstalling dependencies (Linux)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -60,6 +53,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -71,7 +65,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
-      - run: |
+      - shell: bash
+        run: |
           if ls /usr/bin/errno; then
             echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
             exit 1

.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-enabled-on-macos:
     strategy:
@@ -41,7 +35,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -58,6 +51,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -69,7 +63,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - run: |
+      - shell: bash
+        run: |
           if ! ls /usr/bin/errno; then
             echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
           else

.github/workflows/__cpp-deptrace-enabled.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   cpp-deptrace-enabled:
     strategy:
@@ -43,7 +37,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'C/C++: autoinstalling dependencies (Linux)'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -60,6 +53,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           cp -a ../action/tests/cpp-autobuild autobuild-dir
       - uses: ./../action/init
@@ -71,7 +65,8 @@ jobs:
           working-directory: autobuild-dir
         env:
           CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
-      - run: |
+      - shell: bash
+        run: |
           if ! ls /usr/bin/errno; then
             echo "Did not autoinstall errno"
             exit 1

.github/workflows/__diagnostics-export.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   diagnostics-export:
     strategy:
@@ -38,10 +32,17 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
     name: Diagnostic export
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -63,6 +64,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Add test diagnostics
+        shell: bash
         env:
           CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
         run: |
@@ -84,7 +86,7 @@ jobs:
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check diagnostics appear in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
         with:

.github/workflows/__export-file-baseline-information.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   export-file-baseline-information:
     strategy:
@@ -50,10 +44,9 @@ jobs:
             version: nightly-latest
           - os: macos-latest
             version: nightly-latest
-          - os: windows-latest
+          - os: windows-2025
             version: nightly-latest
     name: Export file baseline information
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -70,7 +63,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -79,7 +72,12 @@ jobs:
         with:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -91,6 +89,7 @@ jobs:
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           expected_baseline_languages="c csharp go java kotlin javascript python ruby"

.github/workflows/__extractor-ram-threads.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   extractor-ram-threads:
     strategy:
@@ -39,7 +33,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Extractor ram and threads options test
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -61,6 +54,7 @@ jobs:
           ram: 230
           threads: 1
       - name: Assert Results
+        shell: bash
         run: |
           if [ "${CODEQL_RAM}" != "230" ]; then
             echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"

.github/workflows/__go-custom-queries.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-custom-queries:
     strategy:
@@ -51,7 +45,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: 'Go: Custom queries'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -68,7 +61,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -78,6 +71,7 @@ jobs:
           config-file: ./.github/codeql/custom-queries.yml
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround-diagnostic:
     strategy:
@@ -49,7 +43,6 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: diagnostic when Go is changed after init step'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,7 +59,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -75,17 +68,18 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
   # Deliberately change Go after the `init` step
-      - uses: actions/setup-go@v6
+      - uses: actions/setup-go@v5
         with:
           go-version: '1.20'
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/go.sarif
         with:

.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround-no-file-program:
     strategy:
@@ -49,7 +43,6 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: diagnostic when `file` is not installed'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,7 +59,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -80,13 +73,14 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Check diagnostic appears in SARIF
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/go.sarif
         with:

.github/workflows/__go-indirect-tracing-workaround.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-indirect-tracing-workaround:
     strategy:
@@ -49,7 +43,6 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: 'Go: workaround for indirect tracing'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,7 +59,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -75,9 +68,11 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - run: |
+      - shell: bash
+        run: |
           if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
             echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
               "CODEQL_ACTION_GO_BINARY environment variable is not set."

.github/workflows/__go-tracing-autobuilder.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-autobuilder:
     strategy:
@@ -66,10 +60,6 @@ jobs:
             version: stable-v2.21.4
           - os: macos-latest
             version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: macos-latest
-            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -83,7 +73,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with autobuilder step'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -100,7 +89,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -110,7 +99,8 @@ jobs:
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/autobuild
       - uses: ./../action/analyze
-      - run: |
+      - shell: bash
+        run: |
           if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
             echo "Expected the Go autobuilder to be run, but the" \
               "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."

.github/workflows/__go-tracing-custom-build-steps.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-custom-build-steps:
     strategy:
@@ -66,10 +60,6 @@ jobs:
             version: stable-v2.21.4
           - os: macos-latest
             version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: macos-latest
-            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -83,7 +73,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with custom build steps'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -100,7 +89,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -109,9 +98,11 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: go build main.go
       - uses: ./../action/analyze
-      - run: |
+      - shell: bash
+        run: |
           # Once we start running Bash 4.2 in all environments, we can replace the
           # `! -z` flag with the more elegant `-v` which confirms that the variable
           # is actually unset and not potentially set to a blank value.

.github/workflows/__go-tracing-legacy-workflow.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   go-tracing-legacy-workflow:
     strategy:
@@ -66,10 +60,6 @@ jobs:
             version: stable-v2.21.4
           - os: macos-latest
             version: stable-v2.21.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
-          - os: macos-latest
-            version: stable-v2.22.4
           - os: ubuntu-latest
             version: default
           - os: macos-latest
@@ -83,7 +73,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: 'Go: tracing with legacy workflow'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -100,7 +89,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -109,7 +98,8 @@ jobs:
           languages: go
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
-      - run: |
+      - shell: bash
+        run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d go ]]; then
             echo "Did not find a Go database"

.github/workflows/__init-with-registries.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   init-with-registries:
     strategy:
@@ -38,12 +32,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
     name: 'Packaging: Download using registries'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       packages: read
@@ -73,6 +78,7 @@ jobs:
               token: "${{ secrets.GITHUB_TOKEN }}"
 
       - name: Verify packages installed
+        shell: bash
         run: |
           PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
           CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
@@ -94,6 +100,7 @@ jobs:
           fi
 
       - name: Verify qlconfig.yml file was created
+        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
@@ -106,6 +113,9 @@ jobs:
           fi
 
       - name: Verify contents of qlconfig.yml
+    # yq is not available on windows
+        if: runner.os != 'Windows'
+        shell: bash
         run: |
           QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
           cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'

.github/workflows/__javascript-source-root.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   javascript-source-root:
     strategy:
@@ -43,7 +37,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Custom source root
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -60,6 +53,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Move codeql-action
+        shell: bash
         run: |
           mkdir ../new-source-root
           mv * ../new-source-root
@@ -72,6 +66,7 @@ jobs:
         with:
           skip-queries: true
       - name: Assert database exists
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d javascript ]]; then

.github/workflows/__job-run-uuid-sarif.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   job-run-uuid-sarif:
     strategy:
@@ -39,7 +33,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Job run UUID added to SARIF
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -70,6 +63,7 @@ jobs:
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Check results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)

.github/workflows/__language-aliases.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   language-aliases:
     strategy:
@@ -39,7 +33,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Language aliases
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read

.github/workflows/__multi-language-autodetect.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   multi-language-autodetect:
     strategy:
@@ -66,10 +60,6 @@ jobs:
             version: stable-v2.21.4
           - os: ubuntu-latest
             version: stable-v2.21.4
-          - os: macos-latest
-            version: stable-v2.22.4
-          - os: ubuntu-latest
-            version: stable-v2.22.4
           - os: macos-latest
             version: default
           - os: ubuntu-latest
@@ -83,7 +73,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Multi-language repository
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -100,14 +89,10 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
-      - name: Use Xcode 16
-        if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
-        run: sudo xcode-select -s "/Applications/Xcode_16.app"
-
       - uses: ./../action/init
         id: init
         with:
@@ -116,7 +101,13 @@ jobs:
             || '' }}
           tools: ${{ steps.prepare-test.outputs.tools-url }}
 
+      - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+
       - name: Build code
+        shell: bash
         run: ./build.sh
 
       - uses: ./../action/analyze
@@ -125,6 +116,7 @@ jobs:
           upload-database: false
 
       - name: Check language autodetect for all languages excluding Swift
+        shell: bash
         run: |
           CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
           if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -164,6 +156,7 @@ jobs:
 
       - name: Check language autodetect for Swift on macOS
         if: runner.os == 'macOS'
+        shell: bash
         run: |
           SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
           if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
@@ -171,5 +164,4 @@ jobs:
             exit 1
           fi
     env:
-      CODEQL_ACTION_RESOLVE_SUPPORTED_LANGUAGES_USING_CLI: true
       CODEQL_ACTION_TEST_MODE: true

.github/workflows/__overlay-init-fallback.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   overlay-init-fallback:
     strategy:
@@ -41,7 +35,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Overlay database init fallback
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -68,6 +61,7 @@ jobs:
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases/actions"
           if ! grep -q 'overlayBaseDatabase: false' codeql-database.yml ; then

.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-codescanning-config-inputs-js:
     strategy:
@@ -48,12 +42,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
     name: 'Packaging: Config and input passed to the CLI'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -62,13 +67,6 @@ jobs:
     steps:
       - name: Check out repository
         uses: actions/checkout@v5
-      - name: Install Node.js
-        uses: actions/setup-node@v5
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -77,7 +75,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -88,6 +86,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -103,6 +102,7 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-inputs-js.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-config-inputs-js:
     strategy:
@@ -48,12 +42,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
     name: 'Packaging: Config and input'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -62,13 +67,6 @@ jobs:
     steps:
       - name: Check out repository
         uses: actions/checkout@v5
-      - name: Install Node.js
-        uses: actions/setup-node@v5
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -77,7 +75,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -88,6 +86,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -103,6 +102,7 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-config-js.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-config-js:
     strategy:
@@ -48,12 +42,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
     name: 'Packaging: Config file'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -62,13 +67,6 @@ jobs:
     steps:
       - name: Check out repository
         uses: actions/checkout@v5
-      - name: Install Node.js
-        uses: actions/setup-node@v5
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -77,7 +75,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -87,6 +85,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -102,6 +101,7 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__packaging-inputs-js.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   packaging-inputs-js:
     strategy:
@@ -48,12 +42,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
     name: 'Packaging: Action input'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -62,13 +67,6 @@ jobs:
     steps:
       - name: Check out repository
         uses: actions/checkout@v5
-      - name: Install Node.js
-        uses: actions/setup-node@v5
-        with:
-          node-version: 20.x
-          cache: npm
-      - name: Install dependencies
-        run: npm ci
       - name: Prepare test
         id: prepare-test
         uses: ./.github/actions/prepare-test
@@ -77,7 +75,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -88,6 +86,7 @@ jobs:
           packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -102,6 +101,7 @@ jobs:
           queries-not-run: foo,bar
 
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__quality-queries.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   quality-queries:
     strategy:
@@ -38,24 +32,17 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
+          - os: macos-latest
             version: linked
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
+          - os: windows-2025
             version: linked
-            analysis-kinds: code-scanning,code-quality
           - os: ubuntu-latest
             version: nightly-latest
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
+          - os: macos-latest
             version: nightly-latest
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
+          - os: windows-2025
             version: nightly-latest
-            analysis-kinds: code-scanning,code-quality
     name: Quality queries input
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -74,39 +61,33 @@ jobs:
       - uses: ./../action/init
         with:
           languages: javascript
-          analysis-kinds: ${{ matrix.analysis-kinds }}
+          quality-queries: code-quality
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - uses: ./../action/analyze
         with:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Upload security SARIF
-        if: contains(matrix.analysis-kinds, 'code-scanning')
         uses: actions/upload-artifact@v4
         with:
-          name: |
-            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.sarif.json
+          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.sarif.json
           path: ${{ runner.temp }}/results/javascript.sarif
           retention-days: 7
       - name: Upload quality SARIF
-        if: contains(matrix.analysis-kinds, 'code-quality')
         uses: actions/upload-artifact@v4
         with:
-          name: |
-            quality-queries-${{ matrix.os }}-${{ matrix.version }}-${{ matrix.analysis-kinds }}.quality.sarif.json
+          name: quality-queries-${{ matrix.os }}-${{ matrix.version }}.quality.sarif.json
           path: ${{ runner.temp }}/results/javascript.quality.sarif
           retention-days: 7
       - name: Check quality query does not appear in security SARIF
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
           EXPECT_PRESENT: 'false'
         with:
           script: ${{ env.CHECK_SCRIPT }}
       - name: Check quality query appears in quality SARIF
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        uses: actions/github-script@v8
+        uses: actions/github-script@v7
         env:
           SARIF_PATH: ${{ runner.temp }}/results/javascript.quality.sarif
           EXPECT_PRESENT: 'true'

.github/workflows/__remote-config.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   remote-config:
     strategy:
@@ -51,7 +45,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Remote config file
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -68,7 +61,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -79,6 +72,7 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__resolve-environment-action.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   resolve-environment-action:
     strategy:
@@ -38,12 +32,23 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
           - os: ubuntu-latest
             version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-2025
+            version: nightly-latest
     name: Resolve environment
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read

.github/workflows/__rubocop-multi-language.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   rubocop-multi-language:
     strategy:
@@ -39,7 +33,6 @@ jobs:
           - os: ubuntu-latest
             version: default
     name: RuboCop multi-language
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -56,14 +49,17 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Set up Ruby
-        uses: ruby/setup-ruby@0481980f17b760ef6bca5e8c55809102a0af1e5a # v1.263.0
+        uses: ruby/setup-ruby@2a7b30092b0caf9c046252510f9273b4875f3db9 # v1.254.0
         with:
           ruby-version: 2.6
       - name: Install Code Scanning integration
+        shell: bash
         run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
       - name: Install dependencies
+        shell: bash
         run: bundle install
       - name: RuboCop run
+        shell: bash
         run: |
           bash -c "
             bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif

.github/workflows/__ruby.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   ruby:
     strategy:
@@ -49,7 +43,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Ruby analysis
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -74,6 +67,7 @@ jobs:
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
           if [[ ! -d "$RUBY_DB" ]]; then

.github/workflows/__rust.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   rust:
     strategy:
@@ -47,7 +41,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Rust analysis
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -72,6 +65,7 @@ jobs:
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           RUST_DB="${{ fromJson(steps.analysis.outputs.db-locations).rust }}"
           if [[ ! -d "$RUST_DB" ]]; then

.github/workflows/__split-workflow.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   split-workflow:
     strategy:
@@ -59,7 +53,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Split workflow
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -76,7 +69,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -87,6 +80,7 @@ jobs:
           languages: javascript
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         with:
@@ -95,6 +89,7 @@ jobs:
           upload-database: false
 
       - name: Assert No Results
+        shell: bash
         run: |
           if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
             echo "Expected results directory to be empty after skipping query execution!"
@@ -105,6 +100,7 @@ jobs:
           output: ${{ runner.temp }}/results
           upload-database: false
       - name: Assert Results
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/results"
           # We should have 4 hits from these rules

.github/workflows/__start-proxy.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   start-proxy:
     strategy:
@@ -40,10 +34,9 @@ jobs:
             version: linked
           - os: macos-latest
             version: linked
-          - os: windows-latest
+          - os: windows-2025
             version: linked
     name: Start proxy
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read

.github/workflows/__submit-sarif-failure.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   submit-sarif-failure:
     strategy:
@@ -43,7 +37,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Submit SARIF after failure
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: write # needed to upload the SARIF file

.github/workflows/__swift-autobuild.yml

@@ -24,12 +24,6 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   swift-autobuild:
     strategy:
@@ -39,7 +33,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Swift analysis using autobuild
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -61,7 +54,11 @@ jobs:
           languages: swift
           build-mode: autobuild
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
       - name: Check working directory
+        shell: bash
         run: pwd
       - uses: ./../action/autobuild
         timeout-minutes: 30
@@ -70,6 +67,7 @@ jobs:
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__swift-custom-build.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   swift-custom-build:
     strategy:
@@ -53,7 +47,6 @@ jobs:
           - os: macos-latest
             version: nightly-latest
     name: Swift analysis using a custom build command
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -70,27 +63,30 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
-      - name: Use Xcode 16
-        if: runner.os == 'macOS' && matrix.version != 'nightly-latest'
-        run: sudo xcode-select -s "/Applications/Xcode_16.app"
       - uses: ./../action/init
         id: init
         with:
           languages: swift
           tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
       - name: Check working directory
+        shell: bash
         run: pwd
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
       - name: Check database
+        shell: bash
         run: |
           SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
           if [[ ! -d "$SWIFT_DB" ]]; then

.github/workflows/__test-autobuild-working-dir.yml

@@ -24,14 +24,8 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
-  autobuild-working-dir:
+  test-autobuild-working-dir:
     strategy:
       fail-fast: false
       matrix:
@@ -39,7 +33,6 @@ jobs:
           - os: ubuntu-latest
             version: linked
     name: Autobuild working directory
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -56,6 +49,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Test setup
+        shell: bash
         run: |
           # Make sure that Gradle build succeeds in autobuild-dir ...
           cp -a ../action/tests/java-repo autobuild-dir
@@ -70,6 +64,7 @@ jobs:
           working-directory: autobuild-dir
       - uses: ./../action/analyze
       - name: Check database
+        shell: bash
         run: |
           cd "$RUNNER_TEMP/codeql_databases"
           if [[ ! -d java ]]; then

.github/workflows/__test-local-codeql.yml

@@ -34,22 +34,15 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
-  local-bundle:
+  test-local-codeql:
     strategy:
       fail-fast: false
       matrix:
         include:
           - os: ubuntu-latest
-            version: linked
+            version: nightly-latest
     name: Local CodeQL bundle
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,13 +59,16 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
-      - name: Fetch latest CodeQL bundle
+      - name: Fetch a CodeQL bundle
+        shell: bash
+        env:
+          CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
         run: |
-          wget https://github.com/github/codeql-action/releases/latest/download/codeql-bundle-linux64.tar.zst
+          wget "$CODEQL_URL"
       - id: init
         uses: ./../action/init
         with:
@@ -80,6 +76,7 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ./codeql-bundle-linux64.tar.zst
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
     env:

.github/workflows/__test-proxy.yml

@@ -24,14 +24,8 @@ on:
     inputs: {}
   workflow_call:
     inputs: {}
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
-  global-proxy:
+  test-proxy:
     strategy:
       fail-fast: false
       matrix:
@@ -41,7 +35,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Proxy test
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read

.github/workflows/__unset-environment.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   unset-environment:
     strategy:
@@ -51,7 +45,6 @@ jobs:
           - os: ubuntu-latest
             version: nightly-latest
     name: Test unsetting environment variables
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -68,7 +61,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -80,12 +73,14 @@ jobs:
           languages: cpp,csharp,go,java,javascript,python,ruby
           tools: ${{ steps.prepare-test.outputs.tools-url }}
       - name: Build code
+        shell: bash
         run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
       - uses: ./../action/analyze
         id: analysis
         with:
           upload-database: false
-      - run: |
+      - shell: bash
+        run: |
           CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
           if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
             echo "::error::Did not create a database for CPP, or created it in the wrong location." \

.github/workflows/__upload-quality-sarif.yml

@@ -0,0 +1,91 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     pr-checks/sync.sh
+# to regenerate this file.
+
+name: 'PR Check - Upload-sarif: code quality endpoint'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+  workflow_call:
+    inputs:
+      go-version:
+        type: string
+        description: The version of Go to install
+        required: false
+        default: '>=1.21.0'
+jobs:
+  upload-quality-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
+    name: 'Upload-sarif: code quality endpoint'
+    permissions:
+      contents: read
+      security-events: read
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v5
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Install Go
+        uses: actions/setup-go@v5
+        with:
+          go-version: ${{ inputs.go-version || '>=1.21.0' }}
+          cache: false
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+          quality-queries: code-quality
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+      - uses: ./../action/upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+    env:
+      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__upload-ref-sha-input.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   upload-ref-sha-input:
     strategy:
@@ -48,8 +42,11 @@ jobs:
         include:
           - os: ubuntu-latest
             version: default
+          - os: macos-latest
+            version: default
+          - os: windows-2025
+            version: default
     name: "Upload-sarif: 'ref' and 'sha' from inputs"
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,7 +63,7 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
@@ -77,6 +74,7 @@ jobs:
           config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
             github.sha }}
       - name: Build code
+        shell: bash
         run: ./build.sh
   # Generate some SARIF we can upload with the upload-sarif step
       - uses: ./../action/analyze

.github/workflows/__upload-sarif.yml

@@ -1,158 +0,0 @@
-# Warning: This file is generated automatically, and should not be modified.
-# Instead, please modify the template in the pr-checks directory and run:
-#     pr-checks/sync.sh
-# to regenerate this file.
-
-name: PR Check - Test different uses of `upload-sarif`
-env:
-  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  GO111MODULE: auto
-on:
-  push:
-    branches:
-      - main
-      - releases/v*
-  pull_request:
-    types:
-      - opened
-      - synchronize
-      - reopened
-      - ready_for_review
-  schedule:
-    - cron: '0 5 * * *'
-  workflow_dispatch:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-  workflow_call:
-    inputs:
-      go-version:
-        type: string
-        description: The version of Go to install
-        required: false
-        default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
-jobs:
-  upload-sarif:
-    strategy:
-      fail-fast: false
-      matrix:
-        include:
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-scanning
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-quality
-          - os: ubuntu-latest
-            version: default
-            analysis-kinds: code-scanning,code-quality
-    name: Test different uses of `upload-sarif`
-    if: github.triggering_actor != 'dependabot[bot]'
-    permissions:
-      contents: read
-      security-events: read
-    timeout-minutes: 45
-    runs-on: ${{ matrix.os }}
-    steps:
-      - name: Check out repository
-        uses: actions/checkout@v5
-      - name: Prepare test
-        id: prepare-test
-        uses: ./.github/actions/prepare-test
-        with:
-          version: ${{ matrix.version }}
-          use-all-platform-bundle: 'false'
-          setup-kotlin: 'true'
-      - name: Install Go
-        uses: actions/setup-go@v6
-        with:
-          go-version: ${{ inputs.go-version || '>=1.21.0' }}
-          cache: false
-      - uses: ./../action/init
-        with:
-          tools: ${{ steps.prepare-test.outputs.tools-url }}
-          languages: csharp,java,javascript,python
-          analysis-kinds: ${{ matrix.analysis-kinds }}
-      - name: Build code
-        run: ./build.sh
-  # Generate some SARIF we can upload with the upload-sarif step
-      - uses: ./../action/analyze
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          upload: never
-          output: ${{ runner.temp }}/results
-
-      - name: |
-          Upload all SARIF files for `analysis-kinds: ${{ matrix.analysis-kinds }}`
-        uses: ./../action/upload-sarif
-        id: upload-sarif
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          sarif_file: ${{ runner.temp }}/results
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:all-files/
-      - name: Fail for missing output from `upload-sarif` step for `code-scanning`
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-scanning)
-        run: exit 1
-      - name: Fail for missing output from `upload-sarif` step for `code-quality`
-        if: contains(matrix.analysis-kinds, 'code-quality') && !(fromJSON(steps.upload-sarif.outputs.sarif-ids).code-quality)
-        run: exit 1
-
-      - name: Upload single SARIF file for Code Scanning
-        uses: ./../action/upload-sarif
-        id: upload-single-sarif-code-scanning
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          sarif_file: ${{ runner.temp }}/results/javascript.sarif
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-scanning/
-      - name: Fail for missing output from `upload-single-sarif-code-scanning` step
-        if: contains(matrix.analysis-kinds, 'code-scanning') &&
-          !(fromJSON(steps.upload-single-sarif-code-scanning.outputs.sarif-ids).code-scanning)
-        run: exit 1
-      - name: Upload single SARIF file for Code Quality
-        uses: ./../action/upload-sarif
-        id: upload-single-sarif-code-quality
-        if: contains(matrix.analysis-kinds, 'code-quality')
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          sarif_file: ${{ runner.temp }}/results/javascript.quality.sarif
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:single-code-quality/
-      - name: Fail for missing output from `upload-single-sarif-code-quality` step
-        if: contains(matrix.analysis-kinds, 'code-quality') &&
-          !(fromJSON(steps.upload-single-sarif-code-quality.outputs.sarif-ids).code-quality)
-        run: exit 1
-
-      - name: Change SARIF file extension
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        run: mv ${{ runner.temp }}/results/javascript.sarif ${{ runner.temp }}/results/javascript.sarif.json
-      - name: Upload single non-`.sarif` file
-        uses: ./../action/upload-sarif
-        id: upload-single-non-sarif
-        if: contains(matrix.analysis-kinds, 'code-scanning')
-        with:
-          ref: refs/heads/main
-          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
-          sarif_file: ${{ runner.temp }}/results/javascript.sarif.json
-          category: |
-            ${{ github.workflow }}:upload-sarif/analysis-kinds:${{ matrix.analysis-kinds }}/os:${{ matrix.os }}/version:${{ matrix.version }}/test:non-sarif/
-      - name: Fail for missing output from `upload-single-non-sarif` step
-        if: contains(matrix.analysis-kinds, 'code-scanning') && !(fromJSON(steps.upload-single-non-sarif.outputs.sarif-ids).code-scanning)
-        run: exit 1
-    env:
-      CODEQL_ACTION_TEST_MODE: true

.github/workflows/__with-checkout-path.yml

@@ -34,12 +34,6 @@ on:
         description: The version of Go to install
         required: false
         default: '>=1.21.0'
-defaults:
-  run:
-    shell: bash
-concurrency:
-  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
-  group: ${{ github.workflow }}-${{ github.ref }}
 jobs:
   with-checkout-path:
     strategy:
@@ -48,8 +42,11 @@ jobs:
         include:
           - os: ubuntu-latest
             version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-2025
+            version: linked
     name: Use a custom `checkout_path`
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -66,11 +63,12 @@ jobs:
           use-all-platform-bundle: 'false'
           setup-kotlin: 'true'
       - name: Install Go
-        uses: actions/setup-go@v6
+        uses: actions/setup-go@v5
         with:
           go-version: ${{ inputs.go-version || '>=1.21.0' }}
           cache: false
       - name: Delete original checkout
+        shell: bash
         run: |
           # delete the original checkout so we don't accidentally use it.
           # Actions does not support deleting the current working directory, so we
@@ -91,6 +89,7 @@ jobs:
           source-root: x/y/z/some-path/tests/multi-language-repo
 
       - name: Build code
+        shell: bash
         working-directory: x/y/z/some-path/tests/multi-language-repo
         run: |
           ./build.sh
@@ -102,31 +101,31 @@ jobs:
           sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
 
       - name: Verify SARIF after upload
+        shell: bash
         run: |
-          PAYLOAD_FILE="$RUNNER_TEMP/payload-code-scanning.json"
           EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
           EXPECTED_REF="v1.1.0"
           EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
 
-          ACTUAL_COMMIT_OID="$(cat "$PAYLOAD_FILE" | jq -r .commit_oid)"
-          ACTUAL_REF="$(cat "$PAYLOAD_FILE" | jq -r .ref)"
-          ACTUAL_CHECKOUT_URI="$(cat "$PAYLOAD_FILE" | jq -r .checkout_uri)"
+          ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
 
           if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
             echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
 
           if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
             echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
 
           if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
             echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
-            echo "$PAYLOAD_FILE"
+            echo "$RUNNER_TEMP/payload.json"
             exit 1
           fi
     env:

.github/workflows/check-expected-release-files.yml

@@ -9,10 +9,6 @@ on:
     # by other workflows.
     types: [opened, synchronize, reopened, ready_for_review]
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   check-expected-release-files:
     runs-on: ubuntu-latest

.github/workflows/codeql.yml

@@ -13,17 +13,12 @@ on:
     - cron: '30 1 * * 0'
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 env:
   CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
 
 jobs:
   # Identify the CodeQL tool versions to use in the analysis job.
   check-codeql-versions:
-    if: github.triggering_actor != 'dependabot[bot]'
     runs-on: ubuntu-latest
     outputs:
       versions: ${{ steps.compare.outputs.versions }}
@@ -76,7 +71,6 @@ jobs:
         echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
 
   analyze-javascript:
-    if: github.triggering_actor != 'dependabot[bot]'
     needs: [check-codeql-versions]
     strategy:
       fail-fast: false
@@ -97,30 +91,22 @@ jobs:
       id: init
       with:
         languages: javascript
-        config-file: ./.github/codeql/codeql-config-javascript.yml
+        config-file: ./.github/codeql/codeql-config.yml
         tools: ${{ matrix.tools }}
     # confirm steps.init.outputs.codeql-path points to the codeql binary
     - name: Print CodeQL Version
-      run: >
-        "$CODEQL" version --format=json
-      env:
-        CODEQL: ${{steps.init.outputs.codeql-path}}
+      run: ${{steps.init.outputs.codeql-path}} version --format=json
     - name: Perform CodeQL Analysis
       uses: ./analyze
       with:
         category: "/language:javascript"
-        upload: ${{ (matrix.os == 'ubuntu-24.04' && !matrix.tools && 'always') || 'never' }}
 
-  analyze-other:
-    if: github.triggering_actor != 'dependabot[bot]'
+
+  analyze-actions:
     runs-on: ubuntu-latest
 
     strategy:
       fail-fast: false
-      matrix:
-        include:
-          - language: actions
-          - language: python
 
     permissions:
       contents: read
@@ -132,15 +118,9 @@ jobs:
     - name: Initialize CodeQL
       uses: ./init
       with:
-        languages: ${{ matrix.language }}
-        build-mode: none
-        config: >
-          paths-ignore:
-            - lib
-            - tests
-          queries:
-            - uses: security-and-quality
+        languages: actions
+        config-file: ./.github/codeql/codeql-actions-config.yml
     - name: Perform CodeQL Analysis
       uses: ./analyze
       with:
-        category: "/language:${{ matrix.language }}"
+        category: "/language:actions"

.github/workflows/codescanning-config-cli.yml

@@ -22,13 +22,8 @@ on:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   code-scanning-config-tests:
-    if: github.triggering_actor != 'dependabot[bot]'
     continue-on-error: true
 
     permissions:
@@ -42,10 +37,16 @@ jobs:
         include:
         - os: ubuntu-latest
           version: linked
+        - os: macos-latest
+          version: linked
         - os: ubuntu-latest
           version: default
+        - os: macos-latest
+          version: default
         - os: ubuntu-latest
           version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
 
     # Code-Scanning config not created because environment variable is not set
     name: Code Scanning Configuration tests
@@ -54,16 +55,6 @@ jobs:
     steps:
     - name: Check out repository
       uses: actions/checkout@v5
-
-    - name: Set up Node.js
-      uses: actions/setup-node@v5
-      with:
-        node-version: 24
-        cache: 'npm'
-
-    - name: Install dependencies
-      run: npm ci
-
     - name: Prepare test
       id: prepare-test
       uses: ./.github/actions/prepare-test
@@ -175,13 +166,13 @@ jobs:
       with:
         expected-config-file-contents: |
           {
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" },
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }
+            ],
             "packs": {
               "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2", "codeql/javascript-queries" ]
-            },
-            "queries": [
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" },
-              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }
-            ]
+            }
           }
         languages: javascript
         queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql

.github/workflows/debug-artifacts-failure-safe.yml

@@ -17,14 +17,8 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
-
-defaults:
-  run:
-    shell: bash
-
 jobs:
   upload-artifacts:
-    if: github.triggering_actor != 'dependabot[bot]'
     strategy:
       fail-fast: false
       matrix:
@@ -51,7 +45,7 @@ jobs:
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
-      - uses: actions/setup-go@v6
+      - uses: actions/setup-go@v5
         with:
           go-version: ^1.13.1
       - uses: ./../action/init
@@ -61,6 +55,7 @@ jobs:
           debug-artifact-name: my-debug-artifacts
           debug-database-name: my-db
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
@@ -71,7 +66,6 @@ jobs:
           expect-error: true
   download-and-check-artifacts:
     name: Download and check debug artifacts after failure in analyze
-    if: github.triggering_actor != 'dependabot[bot]'
     needs: upload-artifacts
     timeout-minutes: 45
     permissions:
@@ -81,6 +75,7 @@ jobs:
       - name: Download all artifacts
         uses: actions/download-artifact@v5
       - name: Check expected artifacts exist
+        shell: bash
         run: |
           LANGUAGES="cpp csharp go java javascript python"
           for version in $VERSIONS; do

.github/workflows/debug-artifacts-safe.yml

@@ -16,14 +16,8 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
-
-defaults:
-  run:
-    shell: bash
-
 jobs:
   upload-artifacts:
-    if: github.triggering_actor != 'dependabot[bot]'
     strategy:
       fail-fast: false
       matrix:
@@ -47,7 +41,7 @@ jobs:
         uses: ./.github/actions/prepare-test
         with:
           version: ${{ matrix.version }}
-      - uses: actions/setup-go@v6
+      - uses: actions/setup-go@v5
         with:
           go-version: ^1.13.1
       - uses: ./../action/init
@@ -60,12 +54,12 @@ jobs:
           # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
           languages: cpp,csharp,go,java,javascript,python,ruby
       - name: Build code
+        shell: bash
         run: ./build.sh
       - uses: ./../action/analyze
         id: analysis
   download-and-check-artifacts:
     name: Download and check debug artifacts
-    if: github.triggering_actor != 'dependabot[bot]'
     needs: upload-artifacts
     timeout-minutes: 45
     permissions:
@@ -75,6 +69,7 @@ jobs:
       - name: Download all artifacts
         uses: actions/download-artifact@v5
       - name: Check expected artifacts exist
+        shell: bash
         run: |
           VERSIONS="stable-v2.20.3 default linked nightly-latest"
           LANGUAGES="cpp csharp go java javascript python"

.github/workflows/expected-queries-runs.yml

@@ -0,0 +1,49 @@
+name: Check queries that ran
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+
+jobs:
+  expected-queries:
+    name: Expected Queries Tests
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      security-events: read
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v5
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: linked
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+
+    - name: Check Sarif
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/incomplete-hostname-regexp,js/path-injection
+        queries-not-run: foo,bar

.github/workflows/post-release-mergeback.yml

@@ -3,7 +3,7 @@
 #    tag
 # 2. Updates the `vN` tag to refer to this merge commit.
 # 3. Iff vN == vLatest, merges any changes from the release back into the main branch.
-#    Typically, this is two commits – one to update the version number and one to rebuild.
+#    Typically, this is two commits – one to update the version number and one to update dependencies.
 name: Tag release and merge back
 
 on:
@@ -18,10 +18,6 @@ on:
     branches:
       - releases/v*
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   merge-back:
     runs-on: ubuntu-latest
@@ -47,7 +43,7 @@ jobs:
       - uses: actions/checkout@v5
         with:
           fetch-depth: 0  # ensure we have all tags and can push commits
-      - uses: actions/setup-node@v5
+      - uses: actions/setup-node@v4
 
       - name: Update git config
         run: |
@@ -128,18 +124,51 @@ jobs:
           cat $PARTIAL_CHANGELOG
           echo "::endgroup::"
 
-      - name: Create mergeback branch and PR
+      - name: Create mergeback branch
         if: ${{ steps.check.outputs.exists != 'true' && endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
-        uses: ./.github/actions/prepare-mergeback-branch
-        with:
-          base: "${{ env.BASE_BRANCH }}"
-          head: "${{ env.HEAD_BRANCH }}"
-          branch: "${{ steps.getVersion.outputs.newBranch }}"
-          version: "${{ steps.getVersion.outputs.version }}"
-          token: "${{ secrets.GITHUB_TOKEN }}"
+        env:
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+          NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+        run: |
+          set -exu
+          pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
+          pr_body=$(cat << EOF
+            This PR bumps the version number and updates the changelog after the ${VERSION} release.
+
+            Please do the following:
+
+            - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.
+            - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.
+            - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
+            - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
+                  selected rather than "Squash and merge" or "Rebase and merge".
+          EOF
+          )
+
+          # Update the version number ready for the next release
+          npm version patch --no-git-tag-version
+
+          # Update the changelog, adding a new version heading directly above the most recent existing one
+          awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
+          git add .
+          git commit -m "Update changelog and version after ${VERSION}"
+
+          git push origin "${NEW_BRANCH}"
+
+          # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
+          # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
+          gh pr create \
+            --head "${NEW_BRANCH}" \
+            --base "${BASE_BRANCH}" \
+            --title "${pr_title}" \
+            --label "Update dependencies" \
+            --body "${pr_body}" \
+            --assignee "${GITHUB_ACTOR}" \
+            --draft
 
       - name: Generate token
-        uses: actions/create-github-app-token@v2.1.4
+        uses: actions/create-github-app-token@v2.1.1
         id: app-token
         with:
           app-id: ${{ vars.AUTOMATION_APP_ID }}

.github/workflows/pr-checks.yml

@@ -8,79 +8,93 @@ on:
     types: [opened, synchronize, reopened, ready_for_review]
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
-  unit-tests:
-    name: Unit Tests
-    if: github.triggering_actor != 'dependabot[bot]'
-    strategy:
-      fail-fast: false
-      matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
-        node-version: [20, 24]
+  check-js:
+    name: Check JS
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
     permissions:
       contents: read
       security-events: write # needed to upload ESLint results
-    runs-on: ${{ matrix.os }}
-    timeout-minutes: 45
+
+    strategy:
+      fail-fast: false
 
     steps:
-      - name: Prepare git (Windows)
-        if: runner.os == 'Windows'
-        run: git config --global core.autocrlf false
-
-      - uses: actions/checkout@v5
-
-      - name: Set up Node.js
-        uses: actions/setup-node@v5
-        with:
-          node-version: ${{ matrix.node-version }}
-          cache: 'npm'
-
-      - name: Set up Python
-        uses: actions/setup-python@v6
-        with:
-          python-version: 3.11
-
-      - name: Install dependencies
-        run: |
-          # Use the system Bash shell to ensure we can run commands like `npm ci`
-          # that are not available in the default shell on Windows.
-          npm config set script-shell bash
-          npm ci
-
-      - name: Verify compiled JS up to date
-        run: .github/workflows/script/check-js.sh
-
-      - name: Verify PR checks up to date
-        if: always()
-        run: .github/workflows/script/verify-pr-checks.sh
-
-      - name: Run unit tests
-        if: always()
-        run: npm test
-
-      - name: Run pr-checks tests
-        if: always()
-        working-directory: pr-checks
-        run: python -m unittest discover
+      - name: Checkout
+        uses: actions/checkout@v5
 
       - name: Lint
-        if: always() && matrix.os != 'windows-latest'
-        run: npm run lint-ci
+        id: lint
+        run: npm run-script lint-ci
 
       - name: Upload sarif
         uses: github/codeql-action/upload-sarif@v3
-        if: matrix.os == 'ubuntu-latest' && matrix.node-version == 24
         with:
           sarif_file: eslint.sarif
           category: eslint
 
+      - name: Check generated JS
+        run: .github/workflows/script/check-js.sh
+
+  check-node-modules:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
+    name: Check modules up to date
+    permissions:
+      contents: read
+    runs-on: macos-latest
+    timeout-minutes: 45
+
+    steps:
+      - uses: actions/checkout@v5
+      - name: Check node modules up to date
+        run: .github/workflows/script/check-node-modules.sh
+
+  check-file-contents:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
+    name: Check file contents
+    permissions:
+      contents: read
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v5
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.11
+
+      # Ensure the generated PR check workflows are up to date.
+      - name: Verify PR checks up to date
+        run: .github/workflows/script/verify-pr-checks.sh
+
+  npm-test:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
+    name: Unit Test
+    needs: [check-js, check-node-modules]
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-2025]
+    permissions:
+      contents: read
+    runs-on: ${{ matrix.os }}
+    timeout-minutes: 45
+
+    steps:
+      - uses: actions/checkout@v5
+      - name: npm test
+        run: |
+          # Run any commands referenced in package.json using Bash, otherwise
+          # we won't be able to find them on Windows.
+          npm config set script-shell bash
+          npm test
+
   check-node-version:
-    if: github.event.pull_request && github.triggering_actor != 'dependabot[bot]'
+    if: github.event.pull_request
     name: Check Action Node versions
     runs-on: ubuntu-latest
     timeout-minutes: 45

.github/workflows/prepare-release.yml

@@ -1,77 +0,0 @@
-name: Prepare release
-on:
-  workflow_call:
-    outputs:
-      version:
-        description: "The version that is being released."
-        value: ${{ jobs.prepare.outputs.version }}
-      major_version:
-        description: "The major version of the release."
-        value: ${{ jobs.prepare.outputs.major_version }}
-      latest_tag:
-        description: "The most recent, existing release tag."
-        value: ${{ jobs.prepare.outputs.latest_tag }}
-      backport_source_branch:
-        description: "The release branch for the given tag."
-        value: ${{ jobs.prepare.outputs.backport_source_branch }}
-      backport_target_branches:
-        description: "JSON encoded list of branches to target with backports."
-        value: ${{ jobs.prepare.outputs.backport_target_branches }}
-
-  push:
-    paths:
-      - .github/workflows/prepare-release.yml
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  prepare:
-    name: "Prepare release"
-    runs-on: ubuntu-latest
-    if: github.repository == 'github/codeql-action'
-
-    permissions:
-      contents: read
-
-    outputs:
-      version: ${{ steps.versions.outputs.version }}
-      major_version: ${{ steps.versions.outputs.major_version }}
-      latest_tag: ${{ steps.versions.outputs.latest_tag }}
-      backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}
-      backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v5
-        with:
-          fetch-depth: 0 # Need full history for calculation of diffs
-
-      - name: Configure runner for release
-        uses: ./.github/actions/release-initialise
-
-      - name: Get version tags
-        id: versions
-        run: |
-          VERSION="v$(jq '.version' -r 'package.json')"
-          echo "version=${VERSION}" >> $GITHUB_OUTPUT
-          MAJOR_VERSION=$(cut -d '.' -f1 <<< "${VERSION}")
-          echo "major_version=${MAJOR_VERSION}" >> $GITHUB_OUTPUT
-          LATEST_TAG=$(git tag --sort=-v:refname | grep -E '^v[0-9]+\.[0-9]+\.[0-9]+' | head -1)
-          echo "latest_tag=${LATEST_TAG}" >> $GITHUB_OUTPUT
-
-      - name: Determine older release branches
-        id: branches
-        uses: ./.github/actions/release-branches
-        with:
-          major_version: ${{ steps.versions.outputs.major_version }}
-          latest_tag: ${{ steps.versions.outputs.latest_tag }}
-
-      - name: Print release information
-        run: |
-          echo 'version: ${{ steps.versions.outputs.version }}'
-          echo 'major_version: ${{ steps.versions.outputs.major_version }}'
-          echo 'latest_tag: ${{ steps.versions.outputs.latest_tag }}'
-          echo 'backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}'
-          echo 'backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}'

.github/workflows/publish-immutable-action.yml

@@ -4,10 +4,6 @@ on:
   release:
     types: [published]
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   publish:
     runs-on: ubuntu-latest

.github/workflows/python312-windows.yml

@@ -12,22 +12,17 @@ on:
     - cron: '0 0 * * 1'
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   test-setup-python-scripts:
-    if: github.triggering_actor != 'dependabot[bot]'
     env:
       CODEQL_ACTION_TEST_MODE: true
     timeout-minutes: 45
     permissions:
       contents: read
-    runs-on: windows-latest
+    runs-on: windows-2025
 
     steps:
-    - uses: actions/setup-python@v6
+    - uses: actions/setup-python@v5
       with:
         python-version: 3.12
 

.github/workflows/query-filters.yml

@@ -15,14 +15,9 @@ on:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   query-filters:
     name: Query Filters Tests
-    if: github.triggering_actor != 'dependabot[bot]'
     timeout-minutes: 45
     runs-on: ubuntu-latest
     permissions:
@@ -30,16 +25,6 @@ jobs:
     steps:
     - name: Check out repository
       uses: actions/checkout@v5
-
-    - name: Install Node.js
-      uses: actions/setup-node@v5
-      with:
-        node-version: 24
-        cache: npm
-
-    - name: Install dependencies
-      run: npm ci
-
     - name: Prepare test
       id: prepare-test
       uses: ./.github/actions/prepare-test

.github/workflows/rebuild.yml

@@ -5,20 +5,12 @@ on:
     types: [labeled]
   workflow_dispatch:
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   rebuild:
     name: Rebuild Action
     runs-on: ubuntu-latest
     if: github.event.label.name == 'Rebuild' || github.event_name == 'workflow_dispatch'
 
-    env:
-      HEAD_REF: ${{ github.event.pull_request.head.ref || github.event.ref }}
-      BASE_BRANCH: ${{ github.event.pull_request.base.ref || 'main' }}
-
     permissions:
       contents: write # needed to push rebuilt commit
       pull-requests: write # needed to comment on the PR
@@ -27,7 +19,7 @@ jobs:
         uses: actions/checkout@v5
         with:
           fetch-depth: 0
-          ref: ${{ env.HEAD_REF }}
+          ref: ${{ github.event.pull_request.head.ref || github.event.ref }}
 
       - name: Remove label
         if: github.event_name == 'pull_request'
@@ -45,6 +37,8 @@ jobs:
 
       - name: Merge in changes from base branch
         id: merge
+        env:
+          BASE_BRANCH: ${{ github.event.pull_request.base.ref || 'main' }}
         run: |
           git fetch origin "$BASE_BRANCH"
 
@@ -69,25 +63,18 @@ jobs:
 
       - name: Compile TypeScript
         run: |
-          npm ci
+          npm install
           npm run lint -- --fix
           npm run build
 
       - name: Set up Python
-        uses: actions/setup-python@v6
+        uses: actions/setup-python@v5
         with:
           python-version: 3.11
 
-      - name: Sync back version updates to generated workflows
-        # Only sync back versions on Dependabot update PRs
-        if: startsWith(env.HEAD_REF, 'dependabot/')
-        working-directory: pr-checks
-        run: |
-          python3 sync_back.py -v
-
       - name: Generate workflows
-        working-directory: pr-checks
         run: |
+          cd pr-checks
           python -m pip install --upgrade pip
           pip install ruamel.yaml==0.17.31
           python3 sync.py

.github/workflows/rollback-release.yml

@@ -1,186 +0,0 @@
-name: Rollback release
-on:
-  # You can trigger this workflow via workflow dispatch to start a rollback.
-  # This will create a draft release that mirrors the release for `rollback-tag`.
-  workflow_dispatch:
-    inputs:
-      rollback-tag:
-        type: string
-        description: "The tag of an old release to roll-back to."
-        required: true
-  # Only for dry-runs of changes to the workflow.
-  push:
-    # Don't run dry-run on release branches, to avoid an issue where the
-    # "new" tag determined by the "Prepare release" job already exists.
-    branches-ignore:
-      - releases/v*
-    paths:
-      - .github/workflows/rollback-release.yml
-      - .github/actions/prepare-mergeback-branch/**
-
-defaults:
-  run:
-    shell: bash
-
-jobs:
-  prepare:
-    name: "Prepare release"
-    if: github.repository == 'github/codeql-action'
-
-    permissions:
-      contents: read
-
-    uses: ./.github/workflows/prepare-release.yml
-
-  rollback:
-    name: "Create rollback release"
-    if: github.repository == 'github/codeql-action'
-    runs-on: ubuntu-latest
-    timeout-minutes: 45
-
-    # Don't set the deployment environment for test runs
-    # The Actions token does not have permissions to push changes to workflow files.
-    # Since workflow files may change as part of a backport PR, we use the "Automation" environment for real runs to authenticate as a GitHub App and push these changes.
-    environment: ${{ github.event_name == 'workflow_dispatch' && 'Automation' || '' }}
-
-    needs:
-      - prepare
-
-    permissions:
-      contents: write # needed to push to the repo (tags and releases)
-      pull-requests: write # needed to create the mergeback PR
-
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v5
-        with:
-          fetch-depth: 0 # Need full history for calculation of diffs
-
-      - name: Configure runner for release
-        uses: ./.github/actions/release-initialise
-
-      - name: Create tag for testing
-        if: github.event_name != 'workflow_dispatch'
-        run: git tag v0.0.0
-
-      # We start by preparing the mergeback branch, mainly so that we have the updated changelog
-      # readily available for the partial changelog that's needed for the release.
-      - name: Prepare mergeback branch
-        id: mergeback-branch
-        env:
-          BASE_BRANCH: ${{ (github.event_name == 'workflow_dispatch' && 'main') || github.ref_name }}
-          VERSION: ${{ needs.prepare.outputs.version }}
-        run: |
-          set -x
-
-          # Checkout the base branch, since we may be testing on a different branch
-          git checkout "$BASE_BRANCH"
-
-          # Generate a new branch name for the mergeback PR
-          short_sha="${GITHUB_SHA:0:8}"
-          NEW_BRANCH="mergeback/${VERSION}-to-${BASE_BRANCH}-${short_sha}"
-          echo "new-branch=${NEW_BRANCH}" >> $GITHUB_OUTPUT
-
-          # Create the mergeback branch
-          git checkout -b "${NEW_BRANCH}"
-
-      - name: Prepare rollback changelog
-        env:
-          NEW_CHANGELOG: "${{ runner.temp }}/new_changelog.md"
-          # We usually expect to checkout `inputs.rollback-tag` (required for `workflow_dispatch`),
-          # but use `v0.0.0` for testing.
-          ROLLBACK_TAG: ${{ inputs.rollback-tag || 'v0.0.0' }}
-          LATEST_TAG: ${{ needs.prepare.outputs.latest_tag }}
-          VERSION: "${{ needs.prepare.outputs.version }}"
-        run: |
-          python .github/workflows/script/rollback_changelog.py \
-            --target-version "${ROLLBACK_TAG:1}" \
-            --rollback-version "${LATEST_TAG:1}" \
-            --new-version "$VERSION" > $NEW_CHANGELOG
-
-          echo "::group::New CHANGELOG"
-          cat $NEW_CHANGELOG
-          echo "::endgroup::"
-
-      - name: Create tags
-        env:
-          # We usually expect to checkout `inputs.rollback-tag` (required for `workflow_dispatch`),
-          # but use `v0.0.0` for testing.
-          ROLLBACK_TAG: ${{ inputs.rollback-tag || 'v0.0.0' }}
-          RELEASE_TAG: ${{ needs.prepare.outputs.version }}
-          MAJOR_VERSION_TAG: ${{ needs.prepare.outputs.major_version }}
-        run: |
-          git checkout "refs/tags/${ROLLBACK_TAG}"
-          git tag --annotate "${RELEASE_TAG}" --message "${RELEASE_TAG}"
-          git tag --annotate "${MAJOR_VERSION_TAG}" --message "${MAJOR_VERSION_TAG}" --force
-
-      - name: Push tags
-        # skip when testing
-        if: github.event_name == 'workflow_dispatch'
-        env:
-          RELEASE_TAG: ${{ needs.prepare.outputs.version }}
-          MAJOR_VERSION_TAG: ${{ needs.prepare.outputs.major_version }}
-        run: |
-          git push origin --atomic --force refs/tags/"${RELEASE_TAG}" refs/tags/"${MAJOR_VERSION_TAG}"
-
-      - name: Prepare partial Changelog
-        env:
-          NEW_CHANGELOG: "${{ runner.temp }}/new_changelog.md"
-          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
-          VERSION: "${{ needs.prepare.outputs.version }}"
-        run: |
-          python .github/workflows/script/prepare_changelog.py $NEW_CHANGELOG "$VERSION" > $PARTIAL_CHANGELOG
-
-          echo "::group::Partial CHANGELOG"
-          cat $PARTIAL_CHANGELOG
-          echo "::endgroup::"
-
-      - name: Generate token
-        if: github.event_name == 'workflow_dispatch'
-        uses: actions/create-github-app-token@v2.1.4
-        id: app-token
-        with:
-          app-id: ${{ vars.AUTOMATION_APP_ID }}
-          private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
-
-      - name: Create the rollback release
-        if: github.event_name == 'workflow_dispatch'
-        env:
-          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
-          VERSION: "${{ needs.prepare.outputs.version }}"
-          GH_TOKEN: ${{ steps.app-token.outputs.token }}
-          RELEASE_URL: "${{ github.server_url }}/${{ github.repository }}/releases/tag/${{ needs.prepare.outputs.version }}"
-        run: |
-          set -exu
-
-          # Do not mark this release as latest. The most recent bundle release must be marked as latest.
-          # Set as a draft to give us an opportunity to review the rollback release.
-          gh release create \
-            "$VERSION" \
-            --latest=false \
-            --draft \
-            --title "$VERSION" \
-            --notes-file "$PARTIAL_CHANGELOG"
-
-          echo "Created draft rollback release at $RELEASE_URL" >> $GITHUB_STEP_SUMMARY
-
-      - name: Update changelog
-        env:
-          NEW_CHANGELOG: "${{ runner.temp }}/new_changelog.md"
-          NEW_BRANCH: "${{ steps.mergeback-branch.outputs.new-branch }}"
-        run: |
-          git checkout "${NEW_BRANCH}"
-          mv ${NEW_CHANGELOG} CHANGELOG.md
-
-      - name: Create mergeback branch and PR
-        uses: ./.github/actions/prepare-mergeback-branch
-        with:
-          base: "main"
-          head: ""
-          branch: "${{ steps.mergeback-branch.outputs.new-branch }}"
-          version: "${{ needs.prepare.outputs.version }}"
-          token: "${{ secrets.GITHUB_TOKEN }}"
-          # Setting this to `true` for non-workflow_dispatch events will
-          # still push the `branch`, but won't create a corresponding PR
-          dry-run: "${{ github.event_name != 'workflow_dispatch' }}"
-

.github/workflows/script/check-js.sh

@@ -16,18 +16,6 @@ if [ ! -z "$(git status --porcelain)" ]; then
     # If we get a fail here then the PR needs attention
     >&2 echo "Failed: JavaScript files are not up to date. Run 'rm -rf lib && npm run-script build' to update"
     git status
-
-    echo "### Transpiled JS diff" >> $GITHUB_STEP_SUMMARY
-    echo "" >> $GITHUB_STEP_SUMMARY
-    echo '```diff' >> $GITHUB_STEP_SUMMARY
-    git diff --output="$RUNNER_TEMP/js.diff"
-    cat "$RUNNER_TEMP/js.diff" >> $GITHUB_STEP_SUMMARY
-    echo '```' >> $GITHUB_STEP_SUMMARY
-
-    # Reset bundled files to allow other checks to test for changes
-    git checkout lib
-
-    # Fail this check
     exit 1
 fi
 echo "Success: JavaScript files are up to date"

.github/workflows/script/check-node-modules.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+set -eu
+
+# Sanity check that repo is clean to start with
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then this workflow needs attention...
+    >&2 echo "Failed: Repo should be clean before testing!"
+    exit 1
+fi
+
+"$(dirname "$0")/update-node-modules.sh" check-only
+
+# Check that repo is still clean
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then the PR needs attention
+    >&2 echo "Failed: node_modules are not up to date. Add the 'Update dependencies' label to your PR to update them. Note it is important that node modules are updated on macOS and not any other operating system as there is one dependency (fsevents) that is needed for macOS and may not be installed if dependencies are updated on a Windows or Linux machine."
+    git status
+    exit 1
+fi
+echo "Success: node_modules are up to date"

.github/workflows/script/prepare_changelog.py

@@ -12,7 +12,7 @@ def extract_changelog_snippet(changelog_file, version_tag):
     output = EMPTY_CHANGELOG
 
   else:
-    with open(changelog_file, 'r') as f:
+    with open('CHANGELOG.md', 'r') as f:
       lines = f.readlines()
 
       # Include everything up to, but excluding the second heading

.github/workflows/script/rollback_changelog.py

@@ -1,62 +0,0 @@
-import datetime
-import os
-import argparse
-
-EMPTY_CHANGELOG = """# CodeQL Action Changelog
-
-"""
-
-def get_today_string():
-  today = datetime.datetime.today()
-  return '{:%d %b %Y}'.format(today)
-
-# Include everything up to and after the first heading,
-# but not the first heading and body.
-def drop_unreleased_section(lines: list[str]):
-  before_first_section = ''
-  after_first_section = ''
-  found_first_section = False
-  skipped_first_section = False
-
-  for i, line in enumerate(lines):
-    if line.startswith('## ') and not found_first_section:
-      found_first_section = True
-    elif line.startswith('## ') and found_first_section:
-      skipped_first_section = True
-
-    if not found_first_section:
-      before_first_section += line
-    if skipped_first_section:
-      after_first_section += line
-
-  return (before_first_section, after_first_section)
-
-def update_changelog(target_version, rollback_version, new_version):
-  before_first_section = EMPTY_CHANGELOG
-  after_first_section = ''
-
-  if (os.path.exists('CHANGELOG.md')):
-    with open('CHANGELOG.md', 'r') as f:
-      (before_first_section, after_first_section) = drop_unreleased_section(f.readlines())
-
-  newHeader = f'## {new_version} - {get_today_string()}\n'
-
-  print(before_first_section, end="")
-  print(newHeader)
-  print(f"This release rolls back {rollback_version} due to issues with that release. It is identical to {target_version}.\n")
-  print(after_first_section)
-
-# We expect three version strings as input:
-#
-# - target_version: the version that we are re-releasing as `new_version`
-# - rollback_version: the version that we are rolling back, typically the one that followed `target_version`
-# - new_version: the new version that we are releasing `target_version` as, typically the one that follows `rollback_version`
-#
-# Example: python3 .github/workflows/script/rollback_changelog.py --target-version "1.2.3" --rollback-version "1.2.4" --new-version "1.2.5"
-parser = argparse.ArgumentParser(description="Update CHANGELOG.md for a rollback release.")
-parser.add_argument("--target-version", "-t", required=True, help="Version to re-release as new_version.")
-parser.add_argument("--rollback-version", "-r", required=True, help="Version being rolled back.")
-parser.add_argument("--new-version", "-n", required=True, help="New version to publish for target_version.")
-args = parser.parse_args()
-
-update_changelog(args.target_version, args.rollback_version, args.new_version)

.github/workflows/script/update-node-modules.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+set -eu
+
+if [ "$1" != "update" ] && [ "$1" != "check-only" ]; then
+    >&2 echo "Failed: Invalid argument. Must be 'update' or 'check-only'"
+    exit 1
+fi
+
+npm install --force -g npm@9.2.0
+
+# clean the npm cache to ensure we don't have any files owned by root
+sudo npm cache clean --force
+
+if [ "$1" = "update" ]; then
+    npm install
+fi
+
+# Reinstall modules and then clean to remove absolute paths
+# Use 'npm ci' instead of 'npm install' as this is intended to be reproducible
+npm ci
+npm run removeNPMAbsolutePaths

.github/workflows/script/update-required-checks.sh

@@ -1,7 +1,6 @@
 #!/usr/bin/env bash
 # Update the required checks based on the current branch.
-
-set -euo pipefail
+# Typically, this will be main.
 
 SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
 REPO_DIR="$(dirname "$SCRIPT_DIR")"
@@ -33,12 +32,6 @@ CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs -
 
 echo "$CHECKS" | jq
 
-# Fail if there are no checks
-if [ -z "$CHECKS" ] || [ "$(echo "$CHECKS" | jq '. | length')" -eq 0 ]; then
-  echo "No checks found for $GITHUB_SHA"
-  exit 1
-fi
-
 echo "{\"contexts\": ${CHECKS}}" > checks.json
 
 echo "Updating main"

.github/workflows/script/verify-pr-checks.sh

@@ -20,14 +20,6 @@ if [ ! -z "$(git status --porcelain)" ]; then
     git diff
     git status
     >&2 echo "Failed: PR checks are not up to date. Run 'cd pr-checks && python3 sync.py' to update"
-
-    echo "### Generated workflows diff" >> $GITHUB_STEP_SUMMARY
-    echo "" >> $GITHUB_STEP_SUMMARY
-    echo '```diff' >> $GITHUB_STEP_SUMMARY
-    git diff --output="$RUNNER_TEMP/workflows.diff"
-    cat "$RUNNER_TEMP/workflows.diff" >> $GITHUB_STEP_SUMMARY
-    echo '```' >> $GITHUB_STEP_SUMMARY
-
     exit 1
 fi
-echo "Success: PR checks are up to date"
+echo "Success: PR checks are up to date"

.github/workflows/test-codeql-bundle-all.yml

@@ -16,9 +16,6 @@ on:
   schedule:
     - cron: '0 5 * * *'
   workflow_dispatch: {}
-defaults:
-  run:
-    shell: bash
 jobs:
   test-codeql-bundle-all:
     strategy:
@@ -28,7 +25,6 @@ jobs:
         - os: ubuntu-latest
           version: nightly-latest
     name: 'CodeQL Bundle All'
-    if: github.triggering_actor != 'dependabot[bot]'
     permissions:
       contents: read
       security-events: read
@@ -47,9 +43,10 @@ jobs:
       uses: ./../action/init
       with:
         # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
-        languages: cpp,csharp,go,java,javascript,python,ruby
+        languages: cpp,csharp,go,java,javascript,python,ruby 
         tools: ${{ steps.prepare-test.outputs.tools-url }}
     - name: Build code
+      shell: bash
       run: ./build.sh
     - uses: ./../action/analyze
     env:

.github/workflows/update-bundle.yml

@@ -13,10 +13,6 @@ on:
     # to filter pre-release attribute.
     types: [published]
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
   update-bundle:
     if: github.event.release.prerelease && startsWith(github.event.release.tag_name, 'codeql-bundle-')
@@ -40,15 +36,6 @@ jobs:
           git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
           git config --global user.name "github-actions[bot]"
 
-      - name: Set up Node.js
-        uses: actions/setup-node@v5
-        with:
-          node-version: 24
-          cache: 'npm'
-
-      - name: Install dependencies
-        run: npm ci
-
       - name: Update bundle
         uses: ./.github/actions/update-bundle
 

.github/workflows/update-dependencies.yml

@@ -0,0 +1,45 @@
+name: Update dependencies
+on:
+  pull_request_target:
+    types: [opened, synchronize, reopened, ready_for_review, labeled]
+
+jobs:
+  update:
+    name: Update dependencies
+    timeout-minutes: 45
+    runs-on: macos-latest
+    if: contains(github.event.pull_request.labels.*.name, 'Update dependencies') && (github.event.pull_request.head.repo.full_name == 'github/codeql-action')
+    permissions:
+      contents: write # needed to push the updated dependencies
+      pull-requests: write # needed to comment on the PR
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v5
+
+    - name: Remove PR label
+      env:
+        GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
+        REPOSITORY: '${{ github.repository }}'
+        PR_NUMBER: '${{ github.event.pull_request.number }}'
+      run: |
+        gh api "repos/$REPOSITORY/issues/$PR_NUMBER/labels/Update%20dependencies" -X DELETE
+
+    - name: Push updated dependencies
+      env:
+        BRANCH: '${{ github.head_ref }}'
+        GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
+      run: |
+        git fetch origin "$BRANCH" --depth=1
+        git checkout "origin/$BRANCH"
+        .github/workflows/script/update-node-modules.sh update
+        if [ ! -z "$(git status --porcelain)" ]; then
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+          git add node_modules
+          git commit -am "Update checked-in dependencies"
+          git push origin "HEAD:$BRANCH"
+          echo "Pushed a commit to update the checked-in dependencies." \
+            "Please mark the PR as ready for review to trigger PR checks." |
+            gh pr comment --body-file - --repo github/codeql-action "${{ github.event.pull_request.number }}"
+          gh pr ready --undo --repo github/codeql-action "${{ github.event.pull_request.number }}"
+        fi

.github/workflows/update-proxy-release.yml

@@ -0,0 +1,101 @@
+name: Update dependency proxy release assets
+on:
+  workflow_dispatch:
+    inputs:
+      tag:
+        description: "The tag of CodeQL Bundle release that contains the proxy binaries as release assets"
+        type: string
+        required: true
+
+jobs:
+  update:
+    name: Update code and create PR
+    timeout-minutes: 15
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write # needed to push the updated files
+      pull-requests: write # needed to create the PR
+    env:
+      RELEASE_TAG: ${{ inputs.tag }}
+    steps:
+      - name: Check release tag format
+        id: checks
+        shell: bash
+        run: |
+          if ! [[ $RELEASE_TAG =~ ^codeql-bundle-v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then
+            echo "Invalid release tag: expected a CodeQL bundle tag in the 'codeql-bundle-vM.N.P' format."
+            exit 1
+          fi
+
+          echo "target_branch=dependency-proxy/$RELEASE_TAG" >> $GITHUB_OUTPUT
+
+      - name: Check that the release exists
+        shell: bash
+        env:
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+        run: |
+          (gh release view --repo "$GITHUB_REPOSITORY" --json "assets" "$RELEASE_TAG" && echo "Release found.") || exit 1
+
+      - name: Install Node
+        uses: actions/setup-node@v4
+
+      - name: Checkout repository
+        uses: actions/checkout@v5
+        with:
+          fetch-depth: 0  # ensure we have all tags and can push commits
+          ref: main
+
+      - name: Update git config
+        shell: bash
+        run: |
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+
+      - name: Update release tag and version
+        shell: bash
+        run: |
+          NOW=$(date +"%Y%m%d%H%M%S") # only used to make sure we don't fetch stale binaries from the toolcache
+          sed -i "s|https://github.com/github/codeql-action/releases/download/codeql-bundle-v[0-9.]\+/|https://github.com/github/codeql-action/releases/download/$RELEASE_TAG/|g" ./src/start-proxy-action.ts
+          sed -i "s/\"v2.0.[0-9]\+\"/\"v2.0.$NOW\"/g" ./src/start-proxy-action.ts
+
+      - name: Compile TypeScript and commit changes
+        shell: bash
+        env:
+          TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
+        run: |
+          set -exu
+          git checkout -b "$TARGET_BRANCH"
+
+          npm run build
+          git add ./src/start-proxy-action.ts
+          git add ./lib
+          git commit -m "Update release used by \`start-proxy\` action"
+
+      - name: Push changes and open PR
+        shell: bash
+        env:
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+          TARGET_BRANCH: ${{ steps.checks.outputs.target_branch }}
+          PR_FLAG: ${{ (github.event_name == 'workflow_dispatch' && '--draft') || '--dry-run' }}
+        run: |
+          set -exu
+          pr_title="Update release used by \`start-proxy\` to \`$RELEASE_TAG\`"
+          pr_body=$(cat << EOF
+            This PR updates the \`start-proxy\` action to use the private registry proxy binaries that
+            are attached as release assets to the \`$RELEASE_TAG\` release.
+
+
+            Please do the following before merging:
+
+            - [ ] Verify that the changes to the code are correct.
+            - [ ] Mark the PR as ready for review to trigger the CI.
+          EOF
+          )
+
+          git push origin "$TARGET_BRANCH"
+          gh pr create \
+            --head "$TARGET_BRANCH" \
+            --base "main" \
+            --title "${pr_title}" \
+            --body "${pr_body}" \
+            $PR_FLAG

.github/workflows/update-release-branch.yml

@@ -11,18 +11,49 @@ on:
     branches:
       - releases/*
 
-defaults:
-  run:
-    shell: bash
-
 jobs:
 
   prepare:
-    name: "Prepare release"
+    runs-on: ubuntu-latest
+    if: github.repository == 'github/codeql-action'
+    outputs:
+      version: ${{ steps.versions.outputs.version }}
+      major_version: ${{ steps.versions.outputs.major_version }}
+      latest_tag: ${{ steps.versions.outputs.latest_tag }}
+      backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}
+      backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}
     permissions:
       contents: read
+    steps:
+    - uses: actions/checkout@v5
+      with:
+        fetch-depth: 0  # Need full history for calculation of diffs
+    - uses: ./.github/actions/release-initialise
 
-    uses: ./.github/workflows/prepare-release.yml
+    - name: Get version tags
+      id: versions
+      run: |
+        VERSION="v$(jq '.version' -r 'package.json')"
+        echo "version=${VERSION}" >> $GITHUB_OUTPUT
+        MAJOR_VERSION=$(cut -d '.' -f1 <<< "${VERSION}")
+        echo "major_version=${MAJOR_VERSION}" >> $GITHUB_OUTPUT
+        LATEST_TAG=$(git tag --sort=-v:refname | grep -E '^v[0-9]+\.[0-9]+\.[0-9]+' | head -1)
+        echo "latest_tag=${LATEST_TAG}" >> $GITHUB_OUTPUT
+
+    - id: branches
+      name: Determine older release branches
+      uses: ./.github/actions/release-branches
+      with:
+        major_version: ${{ steps.versions.outputs.major_version }}
+        latest_tag: ${{ steps.versions.outputs.latest_tag }}
+
+    - name: debug logging
+      run: |
+        echo 'version: ${{ steps.versions.outputs.version }}'
+        echo 'major_version: ${{ steps.versions.outputs.major_version }}'
+        echo 'latest_tag: ${{ steps.versions.outputs.latest_tag }}'
+        echo 'backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}'
+        echo 'backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}'
 
   update:
     timeout-minutes: 45
@@ -93,7 +124,7 @@ jobs:
       pull-requests: write # needed to create pull request
     steps:
     - name: Generate token
-      uses: actions/create-github-app-token@v2.1.4
+      uses: actions/create-github-app-token@v2.1.1
       id: app-token
       with:
         app-id: ${{ vars.AUTOMATION_APP_ID }}

.github/workflows/update-supported-enterprise-server-versions.yml

@@ -17,7 +17,7 @@ jobs:
 
     steps:
       - name: Setup Python
-        uses: actions/setup-python@v6
+        uses: actions/setup-python@v5
         with:
           python-version: "3.13"
       - name: Checkout CodeQL Action

.gitignore

@@ -1,7 +1,5 @@
-# Dependency directories
-node_modules/
-# Build output for tests
-build/
+# Ignore for example failing-tests.json from AVA
+node_modules/.cache/
 # Java build files
 .gradle/
 *.class
@@ -10,4 +8,4 @@ build/
 # eslint sarif report
 eslint.sarif
 # for local incremental compilation
-tsconfig.tsbuildinfo
+tsconfig.tsbuildinfo

.vscode/settings.json

@@ -5,12 +5,6 @@
     "**/.DS_Store": true,
 
     // transpiled JavaScript
-    "build": true,
-    "lib": true,
-  },
-  "search.exclude": {
-    "**/node_modules": true,
-    "build": true,
     "lib": true,
   },
   // Installing a new Node package often triggers VS Code's git limit warnings as there is typically

CHANGELOG.md

@@ -6,46 +6,6 @@ See the [releases page](https://github.com/github/codeql-action/releases) for th
 
 No user facing changes.
 
-## 4.30.7 - 06 Oct 2025
-
-- [v4+ only] The CodeQL Action now runs on Node.js v24. [#3169](https://github.com/github/codeql-action/pull/3169)
-
-## 3.30.6 - 02 Oct 2025
-
-- Update default CodeQL bundle version to 2.23.2. [#3168](https://github.com/github/codeql-action/pull/3168)
-
-## 3.30.5 - 26 Sep 2025
-
-- We fixed a bug that was introduced in `3.30.4` with `upload-sarif` which resulted in files without a `.sarif` extension not getting uploaded. [#3160](https://github.com/github/codeql-action/pull/3160)
-
-## 3.30.4 - 25 Sep 2025
-
-- We have improved the CodeQL Action's ability to validate that the workflow it is used in does not use different versions of the CodeQL Action for different workflow steps. Mixing different versions of the CodeQL Action in the same workflow is unsupported and can lead to unpredictable results. A warning will now be emitted from the `codeql-action/init` step if different versions of the CodeQL Action are detected in the workflow file. Additionally, an error will now be thrown by the other CodeQL Action steps if they load a configuration file that was generated by a different version of the `codeql-action/init` step. [#3099](https://github.com/github/codeql-action/pull/3099) and [#3100](https://github.com/github/codeql-action/pull/3100)
-- We added support for reducing the size of dependency caches for Java analyses, which will reduce cache usage and speed up workflows. This will be enabled automatically at a later time. [#3107](https://github.com/github/codeql-action/pull/3107)
-- You can now run the latest CodeQL nightly bundle by passing `tools: nightly` to the `init` action. In general, the nightly bundle is unstable and we only recommend running it when directed by GitHub staff. [#3130](https://github.com/github/codeql-action/pull/3130)
-- Update default CodeQL bundle version to 2.23.1. [#3118](https://github.com/github/codeql-action/pull/3118)
-
-## 3.30.3 - 10 Sep 2025
-
-No user facing changes.
-
-## 3.30.2 - 09 Sep 2025
-
-- Fixed a bug which could cause language autodetection to fail. [#3084](https://github.com/github/codeql-action/pull/3084)
-- Experimental: The `quality-queries` input that was added in `3.29.2` as part of an internal experiment is now deprecated and will be removed in an upcoming version of the CodeQL Action. It has been superseded by a new `analysis-kinds` input, which is part of the same internal experiment. Do not use this in production as it is subject to change at any time. [#3064](https://github.com/github/codeql-action/pull/3064)
-
-## 3.30.1 - 05 Sep 2025
-
-- Update default CodeQL bundle version to 2.23.0. [#3077](https://github.com/github/codeql-action/pull/3077)
-
-## 3.30.0 - 01 Sep 2025
-
-- Reduce the size of the CodeQL Action, speeding up workflows by approximately 4 seconds. [#3054](https://github.com/github/codeql-action/pull/3054)
-
-## 3.29.11 - 21 Aug 2025
-
-- Update default CodeQL bundle version to 2.22.4. [#3044](https://github.com/github/codeql-action/pull/3044)
-
 ## 3.29.10 - 18 Aug 2025
 
 No user facing changes.

CONTRIBUTING.md

@@ -13,22 +13,23 @@ Please note that this project is released with a [Contributor Code of Conduct][c
 
 ## Development and Testing
 
-Before you start, ensure that you have a recent version of node (24 or higher) installed, along with a recent version of npm (9.2 or higher). You can see which version of node is used by the action in `init/action.yml`.
+Before you start, ensure that you have a recent version of node (16 or higher) installed, along with a recent version of npm (9.2 or higher). You can see which version of node is used by the action in `init/action.yml`.
 
 ### Common tasks
 
 * Transpile the TypeScript to JavaScript: `npm run build`.  Note that the JavaScript files are committed to git.
 * Run tests: `npm run test`.  You’ll need to ensure that the JavaScript files are up-to-date first by running the command above.
 * Run the linter: `npm run lint`.
-* Run tests for a specific path: `npm run ava -- ./src/filename.test.ts` or `npm run ava -- ./src/feature-flags/`
 
 This project also includes configuration to run tests from VSCode (with support for breakpoints) - open the test file you wish to run and choose "Debug AVA test file" from the Run menu in the Run panel.
 
 You may want to run `tsc --watch` from the command line or inside of vscode in order to ensure build artifacts are up to date as you are working.
 
-### Checking in compiled artifacts
+### Checking in compiled artifacts and `node_modules`
 
-Because CodeQL Action users consume the code directly from this repository, and there can be no build step during a GitHub Actions run, this repository contains all compiled artifacts. There is a PR check that will fail if any of the compiled artifacts are not up to date. Compiled artifacts are stored in the `lib/` directory. For all day-to-day development purposes, this folder can be ignored.
+Because CodeQL Action users consume the code directly from this repository, and there can be no build step during a GitHub Actions run, this repository contains all compiled artifacts and node modules. There is a PR check that will fail if any of the compiled artifacts are not up to date. Compiled artifacts are stored in the `lib/` directory. For all day-to-day development purposes, this folder can be ignored.
+
+Only run `npm install` if you are explicitly changing the set of dependencies in `package.json`. The `node_modules` directory should be up to date when you check out, but if for some reason, there is an inconsistency use `npm ci && npm run removeNPMAbsolutePaths` to ensure the directory is in a state consistent with the `package-lock.json`. Note that due to a macOS-specific dependency, this command should be run on a macOS machine. There is a PR check to ensure the consistency of the `node_modules` directory.
 
 ### Running the action
 
@@ -40,10 +41,10 @@ As well as the unit tests (see _Common tasks_ above), there are integration test
 
 ## Submitting a pull request
 
-1. [Fork][fork] and clone the repository.
-2. Create a new branch: `git checkout -b my-branch-name`.
-3. Make your change, add tests, and make sure the tests still pass. Ensure that you have run `npm run build` and committed any changes to the compiled artifacts.
-4. Push to your fork and [submit a pull request][pr].
+1. [Fork][fork] and clone the repository
+2. Create a new branch: `git checkout -b my-branch-name`
+3. Make your change, add tests, and make sure the tests still pass
+4. Push to your fork and [submit a pull request][pr]
 5. Pat yourself on the back and wait for your pull request to be reviewed and merged.
 
 If you're a GitHub staff member, you can merge your own PR once it's approved; for external contributors, GitHub staff will merge your PR once it's approved.
@@ -61,7 +62,7 @@ Here are a few things you can do that will increase the likelihood of your pull
 
     You can start a release by triggering this workflow via [workflow dispatch](https://github.com/github/codeql-action/actions/workflows/update-release-branch.yml).
 1. The workflow run will open a pull request titled "Merge main into releases/v3". Follow the steps on the checklist in the pull request. Once you've checked off all but the last two of these, approve the PR and automerge it.
-1. When the "Merge main into releases/v3" pull request is merged into the `releases/v3` branch, a mergeback pull request to `main` will be automatically created. This mergeback pull request incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into releases/v3" pull request, and bumps the patch version of the CodeQL Action.
+1. When the "Merge main into releases/v3" pull request is merged into the `releases/v3` branch, a mergeback pull request to `main` will be automatically created. This mergeback pull request incorporates the changelog updates into `main`, tags the release using the merge commit of the "Merge main into releases/v3" pull request, and bumps the patch version of the CodeQL Action. 
 1. If a backport to an older major version is required, a pull request targeting that version's branch will also be automatically created.
 1. Approve the mergeback and backport pull request (if applicable) and automerge them.
 
@@ -69,12 +70,11 @@ Once the mergeback and backport pull request have been merged, the release is co
 
 ## Keeping the PR checks up to date (admin access required)
 
-Since the `codeql-action` runs most of its testing through individual Actions workflows, there are over two hundred required jobs that need to pass in order for a PR to turn green. It would be too tedious to maintain that list manually. You can regenerate the set of required checks automatically by running the [update-required-checks.sh](.github/workflows/script/update-required-checks.sh) script:
+Since the `codeql-action` runs most of its testing through individual Actions workflows, there are over two hundred jobs that need to pass in order for a PR to turn green. You can regenerate the checks automatically by running the [update-required-checks.sh](.github/workflows/script/update-required-checks.sh) script:
 
-- If you run the script without an argument, it will retrieve the set of workflows that ran for the latest commit on `main`. Make sure that your local `main` branch is up to date before running the script.
-- You can specify a commit SHA as argument to retrieve the set of workflows for that commit instead. You will likely want to use this if you have a PR that removes or adds PR checks.
-
-After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v3`, and any other currently supported major versions have been updated.
+1. By default, this script retrieves the checks from the latest SHA on `main`, so make sure that your `main` branch is up to date.
+2. Run the script. If there's a reason to, you can pass in a different SHA as a CLI argument.
+3. After running, go to the [branch protection rules settings page](https://github.com/github/codeql-action/settings/branches) and validate that the rules for `main`, `v3`, and any other currently supported major versions have been updated.
 
 Note that any updates to checks on `main` need to be backported to all currently supported major version branches, in order to maintain the same set of names for required checks.
 

README.md

@@ -62,8 +62,7 @@ For compiled languages:
 
 The following versions of the CodeQL Action are currently supported:
 
-- v4 (latest)
-- v3
+- v3 (latest)
 
 ## Supported versions of the CodeQL Bundle on GitHub Enterprise Server
 

analyze/action.yml

@@ -58,7 +58,7 @@ inputs:
     # If changing this, make sure to update workflow.ts accordingly.
     default: ${{ github.workspace }}
   ref:
-    description: "The ref where results will be uploaded. If not provided, the Action will use the GITHUB_REF environment variable. If provided, the sha input must be provided as well. This input is ignored for pull requests from forks. Expected format: refs/heads/<branch name>, refs/tags/<tag>, refs/pull/<number>/merge, or refs/pull/<number>/head."
+    description: "The ref where results will be uploaded. If not provided, the Action will use the GITHUB_REF environment variable. If provided, the sha input must be provided as well. This input is ignored for pull requests from forks."
     required: false
   sha:
     description: "The sha of the HEAD of the ref where results will be uploaded. If not provided, the Action will use the GITHUB_SHA environment variable. If provided, the ref input must be provided as well. This input is ignored for pull requests from forks."
@@ -92,6 +92,6 @@ outputs:
   sarif-id:
     description: The ID of the uploaded SARIF file.
 runs:
-  using: node24
+  using: node20
   main: "../lib/analyze-action.js"
   post: "../lib/analyze-action-post.js"