Make the CodeQL instance a required parameter of uploadFiles

All the places that still call `uploadFiles` instead of `uploadSpecifiedFiles` are guaranteed to already have one.

src/analyze-action.ts

@@ -344,6 +344,7 @@ async function run() {
     const uploadInput = actionsUtil.getOptionalInput("upload");
     if (runStats && actionsUtil.getUploadValue(uploadInput) === "always") {
       uploadResult = await uploadLib.uploadFiles(
+        codeql,
         outputDir,
         actionsUtil.getRequiredInput("checkout_path"),
         actionsUtil.getOptionalInput("category"),
@@ -355,6 +356,7 @@ async function run() {
 
       if (config.augmentationProperties.qualityQueriesInput !== undefined) {
         const qualityUploadResult = await uploadLib.uploadFiles(
+          codeql,
           outputDir,
           actionsUtil.getRequiredInput("checkout_path"),
           actionsUtil.fixCodeQualityCategory(

src/init-action-post-helper.test.ts

@@ -407,6 +407,7 @@ async function testFailedSarifUpload(
     }
     t.true(
       uploadFiles.calledOnceWith(
+        sinon.match.any,
         sinon.match.string,
         sinon.match.string,
         category,

src/init-action-post-helper.ts

@@ -99,6 +99,7 @@ async function maybeUploadFailedSarif(
 
   logger.info(`Uploading failed SARIF file ${sarifFile}`);
   const uploadResult = await uploadLib.uploadFiles(
+    codeql,
     sarifFile,
     checkoutPath,
     category,

src/upload-lib.ts

@@ -645,6 +645,7 @@ export const CodeQualityTarget: UploadTarget = {
  * to.
  */
 export async function uploadFiles(
+  codeQL: CodeQL,
   inputSarifPath: string,
   checkoutPath: string,
   category: string | undefined,
@@ -658,7 +659,7 @@ export async function uploadFiles(
   );
 
   return uploadSpecifiedFiles(
-    undefined,
+    codeQL,
     sarifPaths,
     checkoutPath,
     category,