Use FF to disable baseline file coverage

lib/setup-codeql-action.js

@@ -89152,6 +89152,10 @@ async function getCodeQLForCmd(cmd, checkVersion) {
       } else if (overlayDatabaseMode === "overlay-base" /* OverlayBase */) {
         extraArgs.push("--overlay-base");
       }
+      const baselineFilesOptions = config.enableFileCoverageInformation ? [
+        "--calculate-language-specific-baseline",
+        "--sublanguage-file-coverage"
+      ] : ["--no-calculate-baseline"];
       await runCli(
         cmd,
         [
@@ -89161,12 +89165,11 @@ async function getCodeQLForCmd(cmd, checkVersion) {
           "--db-cluster",
           config.dbLocation,
           `--source-root=${sourceRoot}`,
-          "--calculate-language-specific-baseline",
+          ...baselineFilesOptions,
           "--extractor-include-aliases",
-          "--sublanguage-file-coverage",
           ...extraArgs,
           ...getExtraOptionsFromEnv(["database", "init"], {
-            ignoringOptions: ["--overwrite"]
+            ignoringOptions: ["--overwrite", ...baselineFilesOptions]
           })
         ],
         { stdin: externalRepositoryToken }