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[hdf5] Update HDF5 to 1.12 (#11747)
* [hdf5] Update HDF5 to 1.12 and use github live-clones instead of binary download * [hdf5] bump control * [hdf5] fix szip and typo about linkage * [hdf5] add missing package namespace.... they somehow missed to set it? * [hdf5] retry without " * [field3d] fix regression and update. Remove windows as unsupported since the cmakelists tries to support windows * fix typo * remove ws Co-authored-by: NancyLi1013 <46708020+NancyLi1013@users.noreply.github.com> * linebreak first patch Co-authored-by: NancyLi1013 <46708020+NancyLi1013@users.noreply.github.com> * ws change Co-authored-by: NancyLi1013 <46708020+NancyLi1013@users.noreply.github.com> * [field3d] update copying installation * [hdf5] use official github repo * clean baseline Co-authored-by: NancyLi1013 <46708020+NancyLi1013@users.noreply.github.com> Co-authored-by: Jack·Boos·Yu <47264268+JackBoosY@users.noreply.github.com>
This commit is contained in:
Alexander Neumann
GitHub
parent
6f33316686
commit
23eadeaedc
@ -1,6 +1,6 @@
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Source: field3d
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Version: 1.7.2
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Version: 1.7.3
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Homepage: https://github.com/imageworks/Field3D
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Description: An open source library for storing voxel data. It provides C++ classes that handle in-memory storage and a file format based on HDF5 that allows the C++ objects to be written to and read from disk.
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Build-Depends: hdf5, boost-regex, boost-thread, boost-program-options, boost-system, openexr, boost-foreach, boost-test, boost-timer, boost-format
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Build-Depends: hdf5[core], boost-regex, boost-thread, boost-program-options, boost-system, openexr, boost-foreach, boost-test, boost-timer, boost-format
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Supports: !(windows|arm|uwp)
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14
ports/field3d/hdf5.api.patch
Normal file
14
ports/field3d/hdf5.api.patch
Normal file
@ -0,0 +1,14 @@
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diff --git a/CMakeLists.txt b/CMakeLists.txt
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index 1e608b3ec..5ff2c3c31 100644
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -34,7 +34,8 @@
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CMAKE_MINIMUM_REQUIRED( VERSION 2.8 )
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PROJECT ( field3d )
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-
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+add_definitions(-UH5_USE_112_API_DEFAULT)
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+add_definitions(-DH5_USE_110_API_DEFAULT)
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set( CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${PROJECT_SOURCE_DIR}/cmake )
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FIND_PACKAGE (Doxygen)
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@ -1,8 +1,5 @@
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include(vcpkg_common_functions)
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if (VCPKG_TARGET_IS_WINDOWS)
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message(FATAL_ERROR "Windows is currently not supported.")
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elseif (TRIPLET_SYSTEM_ARCH MATCHES "arm")
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if (TRIPLET_SYSTEM_ARCH MATCHES "arm")
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message(FATAL_ERROR "ARM is currently not supported.")
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elseif(VCPKG_CMAKE_SYSTEM_NAME STREQUAL WindowsStore)
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message(FATAL_ERROR "Error: UWP builds are currently not supported.")
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@ -11,16 +8,19 @@ endif()
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vcpkg_from_github(
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OUT_SOURCE_PATH SOURCE_PATH
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REPO imageworks/Field3D
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REF v1.7.2
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SHA512 e4ea51310105980f759dce48830db8ae3592ce32a02b246214d8aed9df7a7f5c500314f2daf92196b7a76d648f2909b18112df4c5c3c8949c0676d710dfbf1f2
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REF v1.7.3
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SHA512 de3f10ff120420925de67064b2169f2a30c9180e308acc9090d70567b45be5423f4b1f7eb32bb376c887cea1364803cf7b2db66c2bc49f8a39a1037bbf0e5f39
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HEAD_REF master
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PATCHES
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fix-build_error.patch
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hdf5.api.patch # Switches the HDF5 default API for this port to 1.10
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)
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vcpkg_configure_cmake(
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SOURCE_PATH ${SOURCE_PATH}
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PREFER_NINJA
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OPTIONS
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"-DINSTALL_DOCS:BOOL=OFF"
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)
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vcpkg_install_cmake()
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@ -31,5 +31,5 @@ endif()
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file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
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# Handle copyright
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file(COPY ${SOURCE_PATH}/COPYING ${SOURCE_PATH}/README DESTINATION ${CURRENT_PACKAGES_DIR}/share/field3d)
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file(RENAME ${CURRENT_PACKAGES_DIR}/share/field3d/COPYING ${CURRENT_PACKAGES_DIR}/share/field3d/copyright)
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file(INSTALL "${SOURCE_PATH}/COPYING" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}" RENAME copyright)
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file(INSTALL "${SOURCE_PATH}/README" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}")
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@ -1,5 +1,5 @@
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Source: hdf5
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Version: 1.10.5-12
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Version: 1.12.0
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Homepage: https://www.hdfgroup.org/downloads/hdf5/
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Description: HDF5 is a data model, library, and file format for storing and managing data
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Default-Features: szip, zlib
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@ -1,15 +0,0 @@
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diff --git a/hdf5-1.10.5/hl/src/H5LDprivate.h b/hdf5-1.10.5/hl/src/H5LDprivate.h
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index b52928b53..5f02ea781 100644
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--- a/hdf5-1.10.5/hl/src/H5LDprivate.h
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+++ b/hdf5-1.10.5/hl/src/H5LDprivate.h
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@@ -40,8 +40,8 @@ typedef struct H5LD_memb_t {
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* #2: these two routines are too specific to be made as public routines
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* Decide to do #3 at this point of time after some discussion.
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*/
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-void H5LD_clean_vector(H5LD_memb_t *listv[]);
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-int H5LD_construct_vector(char *fields, H5LD_memb_t *listv[], hid_t par_tid);
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+H5_HLDLL void H5LD_clean_vector(H5LD_memb_t *listv[]);
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+H5_HLDLL int H5LD_construct_vector(char *fields, H5LD_memb_t *listv[], hid_t par_tid);
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#endif /* end _H5LDprivate_H */
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File diff suppressed because it is too large
Load Diff
@ -1,24 +1,31 @@
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diff --git a/hdf5-1.10.5/config/cmake/hdf5-config.cmake.in b/hdf5-1.10.5/config/cmake/hdf5-config.cmake.in
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index 3bd9e1d..7f6699c 100644
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--- a/hdf5-1.10.5/config/cmake/hdf5-config.cmake.in
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+++ b/hdf5-1.10.5/config/cmake/hdf5-config.cmake.in
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@@ -108,11 +108,15 @@ set (HDF5_VERSION_MINOR @HDF5_VERSION_MINOR@)
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diff --git a/config/cmake/hdf5-config.cmake.in b/config/cmake/hdf5-config.cmake.in
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index b5a12a650..a8cbacb1c 100644
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--- a/config/cmake/hdf5-config.cmake.in
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+++ b/config/cmake/hdf5-config.cmake.in
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@@ -54,7 +54,10 @@ set (${HDF5_PACKAGE_NAME}_PARALLEL_FILTERED_WRITES "@PARALLEL_FILTERED_WRITES@")
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#-----------------------------------------------------------------------------
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# Dependencies
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#-----------------------------------------------------------------------------
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+include(CMakeFindDependencyMacro)
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+
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if (${HDF5_PACKAGE_NAME}_ENABLE_PARALLEL)
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+ find_dependency(MPI)
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set (${HDF5_PACKAGE_NAME}_MPI_C_INCLUDE_PATH "@MPI_C_INCLUDE_DIRS@")
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set (${HDF5_PACKAGE_NAME}_MPI_C_LIBRARIES "@MPI_C_LIBRARIES@")
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if (${HDF5_PACKAGE_NAME}_BUILD_FORTRAN)
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@@ -110,11 +113,11 @@ set (${HDF5_PACKAGE_NAME}_VERSION_MINOR @HDF5_VERSION_MINOR@)
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# project which has already built hdf5 as a subproject
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#-----------------------------------------------------------------------------
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if (NOT TARGET "@HDF5_PACKAGE@")
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- if (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS AND NOT TARGET "zlib")
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- if (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS)
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- include (@PACKAGE_SHARE_INSTALL_DIR@/@ZLIB_PACKAGE_NAME@/@ZLIB_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
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+ if (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT AND NOT TARGET ZLIB::ZLIB)
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+ find_package(ZLIB REQUIRED)
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+ if (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT)
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+ find_dependency(ZLIB)
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endif ()
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- if (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS AND NOT TARGET "szip")
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- if (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS)
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- include (@PACKAGE_SHARE_INSTALL_DIR@/@SZIP_PACKAGE_NAME@/@SZIP_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
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+ if (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT AND NOT TARGET "szip")
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+ if(${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS)
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+ include (@PACKAGE_SHARE_INSTALL_DIR@/@SZIP_PACKAGE_NAME@/@SZIP_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
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+ else()
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+ find_package(@SZIP_PACKAGE_NAME@ REQUIRED)
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+ endif()
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+ if (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT)
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+ find_dependency(szip)
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endif ()
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include (@PACKAGE_SHARE_INSTALL_DIR@/@HDF5_PACKAGE@/@HDF5_PACKAGE@@HDF_PACKAGE_EXT@-targets.cmake)
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endif ()
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@ -1,20 +1,14 @@
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vcpkg_fail_port_install(ON_TARGET "UWP")
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vcpkg_download_distfile(ARCHIVE
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URLS "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/CMake-hdf5-1.10.5.tar.gz"
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FILENAME "CMake-hdf5-1.10.5.tar.gz"
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SHA512 a25ea28d7a511f9184d97b5b8cd4c6d52dcdcad2bffd670e24a1c9a6f98b03108014a853553fa2b00d4be7523128b5fd6a4454545e3b17ff8c66fea16a09e962
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)
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vcpkg_extract_source_archive_ex(
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vcpkg_from_github(
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OUT_SOURCE_PATH SOURCE_PATH
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ARCHIVE ${ARCHIVE}
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REF hdf5
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REPO HDFGroup/hdf5
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REF hdf5-1_12_0
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SHA512 d84df1ea72dc6fa038440a370e1b1ff523364474e7f214b967edc26d3191b2ef4fe1d9273c4a086a5945f1ad1ab6aa8dbcda495898e7967b2b73fd93dd5071e0
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HEAD_REF develop
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PATCHES
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hdf5_config.patch
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fix-generate.patch # removes the build of static targets in shared builds
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static-targets.patch # maps the internal static tagets to the shared targets if building as a dynamic library
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export-private.patch # exports two additional functions in shared builds to make hl/tools/h5watch build in shared builds.
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hdf5_config.patch
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szip.patch
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)
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if ("parallel" IN_LIST FEATURES AND "cpp" IN_LIST FEATURES)
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@ -42,11 +36,17 @@ if(FEATURES MATCHES "tools" AND VCPKG_CRT_LINKAGE STREQUAL "static")
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list(APPEND FEATURE_OPTIONS -DBUILD_STATIC_EXECS=ON)
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endif()
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if(NOT VCPKG_LIBRARY_LINKAGE STREQUAL "static")
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list(APPEND FEATURE_OPTIONS
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-DBUILD_STATIC_LIBS=OFF
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-DONLY_SHARED_LIBS=ON)
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endif()
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find_library(SZIP_RELEASE NAMES libsz libszip szip sz PATHS "${CURRENT_INSTALLED_DIR}/lib" NO_DEFAULT_PATH)
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find_library(SZIP_DEBUG NAMES libsz libszip szip sz libsz_D libszip_D szip_D sz_D szip_debug PATHS "${CURRENT_INSTALLED_DIR}/debug/lib" NO_DEFAULT_PATH)
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vcpkg_configure_cmake(
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SOURCE_PATH ${SOURCE_PATH}/hdf5-1.10.5
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SOURCE_PATH ${SOURCE_PATH}
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DISABLE_PARALLEL_CONFIGURE
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PREFER_NINJA
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OPTIONS
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@ -55,8 +55,7 @@ vcpkg_configure_cmake(
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-DHDF5_BUILD_EXAMPLES=OFF
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-DHDF5_INSTALL_DATA_DIR=share/hdf5/data
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-DHDF5_INSTALL_CMAKE_DIR=share
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"-DSZIP_LIBRARY_DEBUG:PATH=${SZIP_DEBUG}"
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"-DSZIP_LIBRARY_RELEASE:PATH=${SZIP_RELEASE}"
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-DHDF_PACKAGE_NAMESPACE:STRING=hdf5::
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)
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vcpkg_install_cmake()
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@ -1,37 +0,0 @@
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diff --git a/hdf5-1.10.5/CMakeLists.txt b/hdf5-1.10.5/CMakeLists.txt
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index 6ca2f5c54..f7a4db9e5 100644
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--- a/hdf5-1.10.5/CMakeLists.txt
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+++ b/hdf5-1.10.5/CMakeLists.txt
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@@ -150,6 +150,7 @@ set (HDF5_JAVA_TEST_LIB_NAME "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_JAVA_TEST_LIB
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#-----------------------------------------------------------------------------
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# Set the target names of all the libraries
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#-----------------------------------------------------------------------------
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+if(NOT BUILD_SHARED_LIBS)
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set (HDF5_LIB_TARGET "${HDF5_LIB_CORENAME}-static")
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set (HDF5_TEST_LIB_TARGET "${HDF5_TEST_LIB_CORENAME}-static")
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set (HDF5_CPP_LIB_TARGET "${HDF5_CPP_LIB_CORENAME}-static")
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@@ -162,9 +163,24 @@ set (HDF5_F90_TEST_LIB_TARGET "${HDF5_F90_TEST_LIB_CORENAME}-static")
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set (HDF5_F90_C_TEST_LIB_TARGET "${HDF5_F90_C_TEST_LIB_CORENAME}-static")
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set (HDF5_HL_F90_LIB_TARGET "${HDF5_HL_F90_LIB_CORENAME}-static")
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set (HDF5_HL_F90_C_LIB_TARGET "${HDF5_HL_F90_C_LIB_CORENAME}-static")
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+else()
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+set (HDF5_LIB_TARGET "${HDF5_LIB_CORENAME}-shared")
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+set (HDF5_TEST_LIB_TARGET "${HDF5_TEST_LIB_CORENAME}-shared")
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+set (HDF5_CPP_LIB_TARGET "${HDF5_CPP_LIB_CORENAME}-shared")
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+set (HDF5_HL_LIB_TARGET "${HDF5_HL_LIB_CORENAME}-shared")
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+set (HDF5_HL_CPP_LIB_TARGET "${HDF5_HL_CPP_LIB_CORENAME}-shared")
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+set (HDF5_TOOLS_LIB_TARGET "${HDF5_TOOLS_LIB_CORENAME}-shared")
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+set (HDF5_F90_LIB_TARGET "${HDF5_F90_LIB_CORENAME}-shared")
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+set (HDF5_F90_C_LIB_TARGET "${HDF5_F90_C_LIB_CORENAME}-shared")
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+set (HDF5_F90_TEST_LIB_TARGET "${HDF5_F90_TEST_LIB_CORENAME}-shared")
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+set (HDF5_F90_C_TEST_LIB_TARGET "${HDF5_F90_C_TEST_LIB_CORENAME}-shared")
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+set (HDF5_HL_F90_LIB_TARGET "${HDF5_HL_F90_LIB_CORENAME}-shared")
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+set (HDF5_HL_F90_C_LIB_TARGET "${HDF5_HL_F90_C_LIB_CORENAME}-shared")
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+endif()
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set (HDF5_JAVA_JNI_LIB_TARGET "${HDF5_JAVA_JNI_LIB_CORENAME}")
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set (HDF5_JAVA_HDF5_LIB_TARGET "${HDF5_JAVA_HDF5_LIB_CORENAME}")
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set (HDF5_JAVA_TEST_LIB_TARGET "${HDF5_JAVA_TEST_LIB_CORENAME}")
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+
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set (HDF5_LIBSH_TARGET "${HDF5_LIB_CORENAME}-shared")
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set (HDF5_TEST_LIBSH_TARGET "${HDF5_TEST_LIB_CORENAME}-shared")
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set (HDF5_CPP_LIBSH_TARGET "${HDF5_CPP_LIB_CORENAME}-shared")
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13
ports/hdf5/szip.patch
Normal file
13
ports/hdf5/szip.patch
Normal file
@ -0,0 +1,13 @@
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diff --git a/CMakeFilters.cmake b/CMakeFilters.cmake
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index 5a8956456..997bb8e81 100644
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--- a/CMakeFilters.cmake
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+++ b/CMakeFilters.cmake
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@@ -100,7 +100,7 @@ option (HDF5_ENABLE_SZIP_SUPPORT "Use SZip Filter" OFF)
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if (HDF5_ENABLE_SZIP_SUPPORT)
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option (HDF5_ENABLE_SZIP_ENCODING "Use SZip Encoding" OFF)
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if (NOT SZIP_USE_EXTERNAL)
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- find_package (SZIP NAMES ${SZIP_PACKAGE_NAME}${HDF_PACKAGE_EXT} COMPONENTS static shared)
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+ find_package (SZIP NAMES ${SZIP_PACKAGE_NAME}${HDF_PACKAGE_EXT})
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if (NOT SZIP_FOUND)
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find_package (SZIP) # Legacy find
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if (SZIP_FOUND)
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@ -445,9 +445,6 @@ fdlibm:arm-uwp=fail
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fdlibm:x64-uwp=fail
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fftw3:arm-uwp=fail
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fftw3:x64-uwp=fail
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field3d:x64-windows=fail
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field3d:x64-windows-static=fail
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field3d:x86-windows=fail
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flint:x64-linux=fail
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flint:x64-osx=fail
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fltk:arm-uwp=fail
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