diff --git a/ports/ccfits/CONTROL b/ports/ccfits/CONTROL
index 16b36bc8af..5cd10f63db 100644
--- a/ports/ccfits/CONTROL
+++ b/ports/ccfits/CONTROL
@@ -1,4 +1,4 @@
 Source: ccfits
-Version: 2.5-1
+Version: 2.5-2
 Description: CCfits is an object oriented interface to the cfitsio library. It is designed to make the capabilities of cfitsio available to programmers working in C++.
 Build-Depends: cfitsio
diff --git a/ports/ccfits/portfile.cmake b/ports/ccfits/portfile.cmake
index 6bd9bd170c..6aeecfd629 100644
--- a/ports/ccfits/portfile.cmake
+++ b/ports/ccfits/portfile.cmake
@@ -1,19 +1,6 @@
-# Common Ambient Variables:
-#   CURRENT_BUILDTREES_DIR    = ${VCPKG_ROOT_DIR}\buildtrees\${PORT}
-#   CURRENT_PACKAGES_DIR      = ${VCPKG_ROOT_DIR}\packages\${PORT}_${TARGET_TRIPLET}
-#   CURRENT_PORT_DIR          = ${VCPKG_ROOT_DIR}\ports\${PORT}
-#   PORT                      = current port name (zlib, etc)
-#   TARGET_TRIPLET            = current triplet (x86-windows, x64-windows-static, etc)
-#   VCPKG_CRT_LINKAGE         = C runtime linkage type (static, dynamic)
-#   VCPKG_LIBRARY_LINKAGE     = target library linkage type (static, dynamic)
-#   VCPKG_ROOT_DIR            = <C:\path\to\current\vcpkg>
-#   VCPKG_TARGET_ARCHITECTURE = target architecture (x64, x86, arm)
-#
-
 include(vcpkg_common_functions)
 #removes current source to prevent static builds from using patched source code
-file(REMOVE_RECURSE ${CURRENT_BUILDTREES_DIR}/src/CCfits)
-file(REMOVE_RECURSE ${CURRENT_BUILDTREES_DIR}/src/CCfits-2.5.tar.gz.extracted)
+file(REMOVE_RECURSE ${CURRENT_BUILDTREES_DIR}/src)
 
 set(SOURCE_PATH ${CURRENT_BUILDTREES_DIR}/src/CCfits)
 
@@ -31,18 +18,16 @@ if(VCPKG_LIBRARY_LINKAGE STREQUAL dynamic)
     )
 endif()
 
-
 vcpkg_configure_cmake(
     SOURCE_PATH ${SOURCE_PATH}
-    PREFER_NINJA # Disable this option if project cannot be built with Ninja
-    # OPTIONS -DUSE_THIS_IN_ALL_BUILDS=1 -DUSE_THIS_TOO=2
-    # OPTIONS_RELEASE -DOPTIMIZE=1
-    # OPTIONS_DEBUG -DDEBUGGABLE=1
+    PREFER_NINJA
+    OPTIONS
+        -DCFITSIO_INCLUDE_DIR=${CURRENT_INSTALLED_DIR}/include/cfitsio
 )
 
 vcpkg_install_cmake()
 
-if(VCPKG_LIBRARY_LINKAGE STREQUAL dynamic)
+if(VCPKG_LIBRARY_LINKAGE STREQUAL "dynamic")
     file(MAKE_DIRECTORY ${CURRENT_PACKAGES_DIR}/bin)
     file(MAKE_DIRECTORY ${CURRENT_PACKAGES_DIR}/debug/bin)
     file(RENAME ${CURRENT_PACKAGES_DIR}/lib/CCfits.dll ${CURRENT_PACKAGES_DIR}/bin/CCfits.dll)
@@ -52,5 +37,13 @@ endif()
 # Remove duplicate include files
 file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
 
+# Patch installed headers to look in the correct subdirectory
+file(GLOB HEADERS ${CURRENT_PACKAGES_DIR}/include/CCfits/*)
+foreach(HEADER IN LISTS HEADERS)
+    file(READ "${HEADER}" _contents)
+    string(REPLACE "\"fitsio.h\"" "\"cfitsio/fitsio.h\"" _contents "${_contents}")
+    file(WRITE "${HEADER}" "${_contents}")
+endforeach()
+
 # Handle copyright
 file(INSTALL ${SOURCE_PATH}/License.txt DESTINATION ${CURRENT_PACKAGES_DIR}/share/ccfits RENAME copyright)
diff --git a/ports/cfitsio/CONTROL b/ports/cfitsio/CONTROL
index b25eb80263..7c50b295d0 100644
--- a/ports/cfitsio/CONTROL
+++ b/ports/cfitsio/CONTROL
@@ -1,3 +1,3 @@
 Source: cfitsio
-Version: 3.410-1
+Version: 3.410-2
 Description: Library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format
diff --git a/ports/cfitsio/portfile.cmake b/ports/cfitsio/portfile.cmake
index 2490beb800..e9caf61d16 100644
--- a/ports/cfitsio/portfile.cmake
+++ b/ports/cfitsio/portfile.cmake
@@ -15,14 +15,19 @@ vcpkg_configure_cmake(
 vcpkg_install_cmake()
 
 # Remove duplicate include files 
-file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include ${CURRENT_PACKAGES_DIR}/include/unistd.h)
+
+# cfitsio uses very common names for its headers, so they must be moved to a subdirectory
+file(RENAME ${CURRENT_PACKAGES_DIR}/include ${CURRENT_PACKAGES_DIR}/cfitsio)
+file(MAKE_DIRECTORY ${CURRENT_PACKAGES_DIR}/include)
+file(RENAME ${CURRENT_PACKAGES_DIR}/cfitsio ${CURRENT_PACKAGES_DIR}/include/cfitsio)
 
 if(VCPKG_LIBRARY_LINKAGE STREQUAL dynamic)
-	# move DLLs to bin directories for dynamic builds
-	file(MAKE_DIRECTORY ${CURRENT_PACKAGES_DIR}/bin)
-	file(RENAME  ${CURRENT_PACKAGES_DIR}/lib/cfitsio.dll ${CURRENT_PACKAGES_DIR}/bin/cfitsio.dll)
-	file(MAKE_DIRECTORY ${CURRENT_PACKAGES_DIR}/debug/bin)
-	file(RENAME  ${CURRENT_PACKAGES_DIR}/debug/lib/cfitsio.dll ${CURRENT_PACKAGES_DIR}/debug/bin/cfitsio.dll)
+    # move DLLs to bin directories for dynamic builds
+    file(MAKE_DIRECTORY ${CURRENT_PACKAGES_DIR}/bin)
+    file(RENAME  ${CURRENT_PACKAGES_DIR}/lib/cfitsio.dll ${CURRENT_PACKAGES_DIR}/bin/cfitsio.dll)
+    file(MAKE_DIRECTORY ${CURRENT_PACKAGES_DIR}/debug/bin)
+    file(RENAME  ${CURRENT_PACKAGES_DIR}/debug/lib/cfitsio.dll ${CURRENT_PACKAGES_DIR}/debug/bin/cfitsio.dll)
 endif()
 
 # Handle copyright
diff --git a/ports/paho-mqtt/CONTROL b/ports/paho-mqtt/CONTROL
index cefd6bb879..1acf080ff2 100644
--- a/ports/paho-mqtt/CONTROL
+++ b/ports/paho-mqtt/CONTROL
@@ -1,4 +1,4 @@
 Source: paho-mqtt
-Version:  1.2.0-2
-Description:  Paho project provides open-source client implementations of MQTT and MQTT-SN messaging protocols aimed at new, existing, and emerging applications for the Internet of Things
+Version: 1.2.0-3
+Description: Paho project provides open-source client implementations of MQTT and MQTT-SN messaging protocols aimed at new, existing, and emerging applications for the Internet of Things
 Build-Depends: openssl
diff --git a/ports/paho-mqtt/portfile.cmake b/ports/paho-mqtt/portfile.cmake
index 3d0fc12e95..19629b92c5 100644
--- a/ports/paho-mqtt/portfile.cmake
+++ b/ports/paho-mqtt/portfile.cmake
@@ -48,7 +48,6 @@ file(GLOB DEBUG_LIBS
   "${CURRENT_BUILDTREES_DIR}/${TARGET_TRIPLET}-dbg/Debug/*.lib"
   "${CURRENT_BUILDTREES_DIR}/${TARGET_TRIPLET}-dbg/*/Debug/*.lib"
 )
-file(GLOB HEADERS "${SOURCE_PATH}/*/*.h")
 if(DLLS)
   file(INSTALL ${DLLS} DESTINATION ${CURRENT_PACKAGES_DIR}/bin)
 endif()
@@ -61,7 +60,7 @@ endif()
 if(DEBUG_LIBS)
   file(INSTALL ${DEBUG_LIBS} DESTINATION ${CURRENT_PACKAGES_DIR}/debug/lib)
 endif()
-file(INSTALL ${HEADERS} DESTINATION ${CURRENT_PACKAGES_DIR}/include)
+file(COPY ${SOURCE_PATH}/src/MQTTAsync.h ${SOURCE_PATH}/src/MQTTClient.h ${SOURCE_PATH}/src/MQTTClientPersistence.h DESTINATION ${CURRENT_PACKAGES_DIR}/include)
 
 if(VCPKG_LIBRARY_LINKAGE STREQUAL static)
   file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin ${CURRENT_PACKAGES_DIR}/debug/bin)